PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS758421.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | C3H | ||||||||
Protein Properties | Length: 36aa MW: 4129.76 Da PI: 8.5174 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.1 | 4.1e-10 | 14 | 35 | 2 | 23 |
-S---SGGGGTS--TTTTT-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkF 23 ++++C+f+++ G C++GdrC++ EcS758421.10 14 DRVNCPFYFKIGACRHGDRCSR 35 689*****************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.577 | 12 | 36 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-7 | 14 | 35 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 36 aa Download sequence Send to blast |
MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 2e-15 | 1 | 35 | 1 | 35 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. | |||||
UniProt | Necessary for the splicing of pre-mRNA (By similarity). Probably active at the 3' splice sites. {ECO:0000250}. | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018463526.1 | 1e-20 | PREDICTED: splicing factor U2af small subunit B, partial | ||||
Refseq | XP_028058763.1 | 2e-20 | splicing factor U2af small subunit B-like isoform X2 | ||||
Refseq | XP_028058764.1 | 2e-20 | splicing factor U2af small subunit B-like isoform X3 | ||||
Swissprot | Q9FMY5 | 1e-19 | U2AFB_ARATH; Splicing factor U2af small subunit B | ||||
Swissprot | Q9S709 | 9e-20 | U2AFA_ARATH; Splicing factor U2af small subunit A | ||||
Swissprot | Q9ZQW8 | 1e-19 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | A0A1J7H766 | 8e-20 | A0A1J7H766_LUPAN; Uncharacterized protein | ||||
STRING | ONIVA05G27760.1 | 3e-20 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 9e-22 | C3H family protein |
Publications ? help Back to Top | |||
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