PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS754499.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 136aa MW: 15487.6 Da PI: 9.1287 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 10 | 64 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq Lee F+ + +++ ++++ LA++l+L+ rqV vWFqNrRa+ k EcS754499.10 10 RKKLRLSREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSK 64 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.4e-39 | 10 | 98 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rls+eq++lLEesF+ +++L+p +K++la +L+l+prqv+vWFqnrRAR k+kq+E+d+++Lk+++++l++en+rL+ke +eLr+ EcS754499.10 10 RKKLRLSREQSALLEESFKLHTTLTPAQKQSLADQLKLKPRQVEVWFQNRRARSKLKQTEVDCQFLKKCCETLSDENRRLKKELQELRS 98 69*************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.617 | 6 | 66 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-17 | 8 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-18 | 9 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.54E-15 | 10 | 67 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 10 | 64 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 10 | 64 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 41 | 64 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 3.9E-16 | 66 | 106 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 9.9E-10 | 66 | 98 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
NDGGDFNGGR KKLRLSREQS ALLEESFKLH TTLTPAQKQS LADQLKLKPR QVEVWFQNRR 60 ARSKLKQTEV DCQFLKKCCE TLSDENRRLK KELQELRSSS SPYVQGPGTA AVMLCPSCEE 120 LTRGNSEATR KENCDI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 66 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010046899.1 | 8e-94 | PREDICTED: homeobox-leucine zipper protein HAT22 | ||||
Swissprot | P46604 | 3e-50 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A059CJI4 | 2e-92 | A0A059CJI4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046899.1 | 3e-93 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1671 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-52 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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