PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS754381.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 308aa    MW: 34414.9 Da    PI: 9.5606
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS754381.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.5e-133586147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
     EcS754381.10 35 KQKWTQEEEEALRAGVAKHGTGKWKDIQRDPEfnkflFSRSNIDLKDKWRNM 86
                     79*******************************999989***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.9573091IPR017930Myb domain
SMARTSM007176.5E-93489IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.6E-153487IPR009057Homeodomain-like
PfamPF002491.7E-93586IPR001005SANT/Myb domain
CDDcd116601.44E-213687No hitNo description
SuperFamilySSF466891.87E-143688IPR009057Homeodomain-like
SMARTSM005262.5E-19144209IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.31E-15144226IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.179146214IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.2E-14146216IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005386.4E-12148207IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
HIRQAFFIAY GGTRALAFRR CSRNQRPARE MGNPKQKWTQ EEEEALRAGV AKHGTGKWKD  60
IQRDPEFNKF LFSRSNIDLK DKWRNMIGGA SGQGQRDKSR AKAKASSDAP STLPSLPNAP  120
NVPVSDEATA EPATDGAQRI ADDGKNTPRY NAMIFEALQT LKDPNGSDTA AIFNYIEKRQ  180
EVPQNFRRLL SSRLRRLVTQ EKLEKVQNCF KIKEIASFET KTPAPKEQDV RPKQLQPVVN  240
ANFLETVDEA AVAAAYKIAD AENKSFDAAE SVKEAERISK MAEDADAMLQ MALGILEKCS  300
RDEMVLVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047536.10.0PREDICTED: single myb histone 4 isoform X2
TrEMBLA0A059CMN40.0A0A059CMN4_EUCGR; Uncharacterized protein
STRINGXP_010047536.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.14e-54MYB_related family protein