PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS745496.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 171aa    MW: 19563.1 Da    PI: 8.2971
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS745496.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000417394223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ Cgk+F +   L  Hir H
  EcS745496.10 73 VCEFCGKRFMNGKALGGHIRIH 94
                  6*******************99 PP
2zf-C2H215.16.8e-05147167323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C +C++ F++  +L  H+r H
  EcS745496.10 147 CYICDRNFPSMKSLFGHMRFH 167
                   66*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.0E-47192IPR007087Zinc finger, C2H2
SMARTSM003550.317294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5937299IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-57398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.12E-77394No hitNo description
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576679.12E-7140167No hitNo description
PROSITE profilePS501578.746144171IPR007087Zinc finger, C2H2
SMARTSM003557.4145167IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146167IPR007087Zinc finger, C2H2
PfamPF139124.1E-5146168IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MDGLRGSQDQ TEVVQLPHQD RGKMAEPDPS ERSESWSQVP KKDPLWIKLK ISKTEQGGEP  60
SEQEEPPSAA VRVCEFCGKR FMNGKALGGH IRIHNQEKNK GSSSKKTDES RLKQKAKCEK  120
HVHEDLPALE KGRDFDCSEK DKEKPCCYIC DRNFPSMKSL FGHMRFHPER N
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034254.11e-118PREDICTED: zinc finger protein ZAT9-like
STRINGXP_010034254.11e-117(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-15C2H2 family protein