PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS745495.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 527aa    MW: 58661.5 Da    PI: 6.9201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS745495.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.00187394223
                  EETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                  +C+ Cgk+F +   L  Hir H
  EcS745495.10 73 VCEFCGKRFMNGKALGGHIRIH 94
                  6*******************99 PP
2zf-C2H213.10.0003148168323
                   ETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                   C +C++ F++  +L  H+r H
  EcS745495.10 148 CYICDRNFPSMKSLFGHMRFH 168
                   66*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.00177192IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5937299IPR007087Zinc finger, C2H2
SMARTSM003550.317294IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-57398IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.87E-57399No hitNo description
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM003557.4146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280147168IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-6147168No hitNo description
PfamPF139121.8E-4147169IPR007087Zinc finger, C2H2
SuperFamilySSF576671.39E-6376403No hitNo description
PfamPF139121.7E-9380405IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845381408IPR007087Zinc finger, C2H2
SMARTSM003550.19381403IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280383403IPR007087Zinc finger, C2H2
PfamPF139121.4E-9453478IPR007087Zinc finger, C2H2
PROSITE profilePS501578.767454481IPR007087Zinc finger, C2H2
SMARTSM003552454476IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280456476IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDGLRGSQDQ TEVVQLPHQD RGKMAEPDPS ERSESWSQVP KKDPLWIKLK ISKTEQGGEP  60
SEQEEPPSAA VRVCEFCGKR FMNGKALGGH IRIHNQEKNK GSSSKKTDES RLRKQKAKCE  120
KHVHEDLPAL EKGRDFDCSE KDKEKPCCYI CDRNFPSMKS LFGHMRFHPE RNWRGVQPPA  180
QEKDGSCTRE VESVDQKATD QDSACLEAGS SGCLVDLLKG LPSWSRTDKR GRKSLIALEP  240
EAIDGLMKLA CAASYDSGIS DDQVSDESPL RKRRLDEEEL PGPKNQNPEP TESQIQQSTN  300
IEGEGSYKAV RNQDYELEHA DRPRKYRKGE RFGHNLERNP NMEAGKKIEV SGMCKTRDLS  360
TNKEVAVMPV KEDKILTDHR FKCMTCEKTF PTFQALGGHR SSHNKERGNF QPPEASLSTG  420
ASGTEKKIAP SAKIHAAETN NCTTSSVQED FMTHRCEICC KKFPTGQALG GHKRCHWAGQ  480
TEGPPSSEVV SPGDQASQSG PRALAFDLNE PPPMDEEDGV ISGFNRA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034254.10.0PREDICTED: zinc finger protein ZAT9-like
STRINGXP_010034254.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-19zinc-finger protein 2