PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS742147.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 115aa MW: 12777.2 Da PI: 5.2519 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.3 | 1.4e-09 | 68 | 90 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+f+ r+G+Ck+G++C+F H+ EcS742147.10 68 RDCQFYVRNGWCKFGANCRFGHP 90 68******************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.35E-6 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-7 | 68 | 90 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.943 | 69 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-4 | 70 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 115 aa Download sequence Send to blast |
ARPDPDEQPP PFFPSSPPAV GPAVESALVE GMRNVALGEA GDGTGEEKDG NFDDRGPKSH 60 YPFGIYARDC QFYVRNGWCK FGANCRFGHP VKRTGFEEKR ERGEFLEPTK QIECK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010029058.1 | 3e-61 | PREDICTED: zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A059AQE7 | 6e-60 | A0A059AQE7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010029058.1 | 1e-60 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22971 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63260.1 | 2e-12 | C3H family protein |