PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS731871.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 366aa    MW: 40765.5 Da    PI: 4.5075
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS731871.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS95.21e-291543612217
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL +  ea +++++el + + +r+ e +sp g++++Rla+y+ +  ++r             ++e    + ++  aa+ +f++++P+ +f+h++a
  EcS731871.10 154 HHLLKAYCEAGNHEQKELMEVISTRIAEKSSPLGEALERLAFYLFRTPENRSDC---------LTRE----SCKNFEAAFLAFYQAFPYGRFAHFAA 237
                   67888888999999999999***********************99999888665.........2222....35566678889*************** PP

          GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrled 188
                   N+a+lea+    e++Hi+Dfd+++G+QWp+ ++a a+R++    l++T +   e+        + +   t++rL++ A+++gv++  + +   ++++
  EcS731871.10 238 NSALLEAMPDVaETIHIVDFDMGEGIQWPPVIEAVAQRNKT---LKLTSLTCDEERrgqdaqLNWNFDDTKRRLHDHARSFGVKLTVDSM---NIAN 328
                   ********88779*************************776...8888877655555655444456679*******************98...4444 PP

          GRAS 189 leleeLrvkp.....gEalaVnlvlqlhrlldes 217
                   l ++eLr ++     +E ++ n+++ l ++ + +
  EcS731871.10 329 L-VNELRKRNegdanKEWMVFNCMVGLPHTGRTT 361
                   4.4555444444555**********999987544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.181127366IPR005202Transcription factor GRAS
PfamPF035143.5E-27154361IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MVMQSGSPPA SWPFQDLTTS TINPLGNYSS NFDFQVGDYG MIPSPISDIT DHSIVQFGMH  60
TAFDASPGVG CELEDFTMDF EGLEAFLNGD EPENTSEMSD GSFASQKAAT DAWSPTSTLS  120
KSEESNSAGA SATTWLPWTL PAKEMEADNL LSLHHLLKAY CEAGNHEQKE LMEVISTRIA  180
EKSSPLGEAL ERLAFYLFRT PENRSDCLTR ESCKNFEAAF LAFYQAFPYG RFAHFAANSA  240
LLEAMPDVAE TIHIVDFDMG EGIQWPPVIE AVAQRNKTLK LTSLTCDEER RGQDAQLNWN  300
FDDTKRRLHD HARSFGVKLT VDSMNIANLV NELRKRNEGD ANKEWMVFNC MVGLPHTGRT  360
TTTRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066039.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059DCA00.0A0A059DCA0_EUCGR; Uncharacterized protein
STRINGXP_010066039.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-14GRAS family protein