PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS730547.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 374aa    MW: 41693.4 Da    PI: 6.1669
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS730547.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-183582148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd+ lv++++ +G g+W++ ar  g++Rt+k+c++rw++yl
     EcS730547.10 35 RGPWTVEEDLTLVNYIANHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 82
                     89********************************************97 PP
2Myb_DNA-binding43.19.9e-1488163146
                      TSSS-HHHHHHHHHHHHHTTTT...............................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...............................tWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++ +++++ ++G++                               +W++Ia++++ gRt++++k++w++
     EcS730547.10  88 RGNITLEEQLMILELHSRWGNRyvslcppkygdmlisrldgsidgflfrviiyRWSKIAQHLP-GRTDNEIKNYWRT 163
                      7999***********************************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4943086IPR017930Myb domain
SMARTSM007171.3E-143484IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-223586IPR009057Homeodomain-like
PfamPF002491.2E-163582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-223689IPR009057Homeodomain-like
CDDcd001676.10E-123782No hitNo description
PROSITE profilePS500908.53783165IPR017877Myb-like domain
SMARTSM007172.6E-987167IPR001005SANT/Myb domain
PfamPF002493.4E-1188163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-2090108IPR009057Homeodomain-like
SuperFamilySSF466891.76E-22137164IPR009057Homeodomain-like
CDDcd001672.82E-7141163No hitNo description
Gene3DG3DSA:1.10.10.606.5E-20141168IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDAKGMIRGA HHSGSGGDSD SQEDDQQAIM EDLRRGPWTV EEDLTLVNYI ANHGEGRWNS  60
LARSAGLKRT GKSCRLRWLN YLRPDVRRGN ITLEEQLMIL ELHSRWGNRY VSLCPPKYGD  120
MLISRLDGSI DGFLFRVIIY RWSKIAQHLP GRTDNEIKNY WRTRVQKHAK QLKCDVNSKQ  180
FKDAMKYLWM PRLVERIQAA SASVSTATVT AAMAAPPTMA TTAASNIGGM AFPPALAGMG  240
GDFRGGRVNV APSYSTPENS CTTASSDSFG AQVSPVSDLT DLTEYYPIPA GDNPNPDYYQ  300
PNNNGQGCYQ ESSLTSPCAY FNNYGMDFQA CMDQNNNQWL DDGGTSDNLW NLADDWYSQQ  360
QQQPHAASII NNNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-20301672106B-MYB
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010024826.10.0PREDICTED: transcription factor MYB108
SwissprotQ9FGY32e-84MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A059B5M01e-178A0A059B5M0_EUCGR; Uncharacterized protein
STRINGXP_010024826.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.25e-80myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]