PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS724694.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 172aa MW: 20445.3 Da PI: 7.9747 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 135 | 8.1e-42 | 1 | 169 | 204 | 373 |
GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvac 300 Vn+ + ++l d++v+ +++rd+vL l+++++P+++v++ + +++n++ F +rf eal +sa++d l+a++ ++++er ++Ere+ grei+nv+ac EcS724694.10 1 VNCLDRFKNL-DDTVEDSNPRDAVLYLIRKIKPDIFVHAIRSSSYNAAFFETRFREALFEFSAVYDLLDATIDHNNKERLVIEREFHGREIMNVIAC 96 6666655555.899999******************************************************************************** PP GRAS 301 egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 eg++r+e+ et+++W+ r +aGFk++pl+++ +k + ++ + + + ++e+ ++++++W++r + S+W EcS724694.10 97 EGSRRIEKPETYKQWQVRHVRAGFKALPLDQDFMKLFRGKMKAWYHKDFVLDEDGNWMLQCWRGRISFGSSCW 169 *********************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 23.504 | 1 | 150 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.8E-39 | 1 | 169 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
VNCLDRFKNL DDTVEDSNPR DAVLYLIRKI KPDIFVHAIR SSSYNAAFFE TRFREALFEF 60 SAVYDLLDAT IDHNNKERLV IEREFHGREI MNVIACEGSR RIEKPETYKQ WQVRHVRAGF 120 KALPLDQDFM KLFRGKMKAW YHKDFVLDED GNWMLQCWRG RISFGSSCWV PT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724295.1 | 1e-120 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34 | ||||
Swissprot | Q3EDH0 | 4e-68 | SCL31_ARATH; Scarecrow-like protein 31 | ||||
TrEMBL | A0A059D5Q9 | 1e-122 | A0A059D5Q9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010043534.1 | 1e-101 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15599 | 6 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 2e-70 | GRAS family protein |