PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS722054.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 161aa MW: 18213.5 Da PI: 7.9899 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37.6 | 3.9e-12 | 2 | 50 | 46 | 98 |
EEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 46 WevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 W+v ++ +++ GW++Fvk++ L+ +D++vF+++g+s+f +v vf+ EcS722054.10 2 WKVGT--MADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 50 99999..888999****************************9999..777775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.324 | 1 | 52 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-9 | 2 | 49 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.65E-11 | 2 | 51 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 2 | 51 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-9 | 15 | 50 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
AWKVGTMADD ENLLFKHGWQ DFVKDHALEK NDILVFRYNG ESSFNVLVFN QHSLCEKETA 60 YFHKRCSHNP TDRECGTKRK LGDSSVEAMH TPVSYDVKRT LTEDPREDRT VTVADRNILS 120 QAKASENLIE AGASGKPRNK KATPKKKLSV AFDCLEEKPG T |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059783.1 | 1e-110 | PREDICTED: B3 domain-containing protein REM16 isoform X2 | ||||
Refseq | XP_010059786.1 | 1e-110 | PREDICTED: B3 domain-containing protein REM16 isoform X4 | ||||
TrEMBL | A0A059BJJ9 | 1e-109 | A0A059BJJ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059782.1 | 1e-110 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10428 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-20 | B3 family protein |