PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS704717.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB_related | ||||||||
Protein Properties | Length: 81aa MW: 9769.92 Da PI: 11.2562 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.8e-11 | 1 | 37 | 11 | 48 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l +v+ G+++W+ Ia++m gR +kqc++rw+++l EcS704717.10 1 RLMMLVETRGMKRWSQIAQMMK-GRVGKQCRERWHNHL 37 577799999************9.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.072 | 1 | 41 | IPR017930 | Myb domain |
Pfam | PF00249 | 8.0E-10 | 1 | 37 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.97E-13 | 2 | 45 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-17 | 2 | 42 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.72E-8 | 5 | 37 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
RLMMLVETRG MKRWSQIAQM MKGRVGKQCR ERWHNHLRPD IKVFPLFFSF KFILPIICSI 60 FRLLPPLYLP LYEFTSTAIL I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-14 | 1 | 65 | 14 | 86 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-14 | 1 | 65 | 68 | 140 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-14 | 1 | 65 | 68 | 140 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-14 | 1 | 65 | 14 | 86 | C-Myb DNA-Binding Domain |
1msf_C | 1e-14 | 1 | 65 | 14 | 86 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018717996.1 | 9e-24 | PREDICTED: transcriptional activator Myb-like | ||||
Swissprot | Q9LVW4 | 7e-18 | MY118_ARATH; Transcription factor MYB118 | ||||
TrEMBL | A0A2G9HVJ7 | 7e-17 | A0A2G9HVJ7_9LAMI; Transcription factor, Myb superfamily | ||||
STRING | XP_010030743.1 | 1e-22 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27405 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 5e-20 | myb domain protein 118 |
Publications ? help Back to Top | |||
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