PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS675818.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13653.4 Da    PI: 10.407
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS675818.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171764350
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                  ie    + vtfskR+ gi KKA+EL +LC+ ev ++ fs+ gk y +s
  EcS675818.10 17 IEKMEEKLVTFSKRKSGIYKKASELITLCGSEVGIVTFSPAGKPYSFS 64
                  78888899***********************************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.866767IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-19766IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-23881IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-15929IPR002100Transcription factor, MADS-box
PfamPF003191.5E-201763IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004044.0E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MARRQTRGRQ RNEMREIEKM EEKLVTFSKR KSGIYKKASE LITLCGSEVG IVTFSPAGKP  60
YSFSHPSIES IANRFHNQNP AQNEGVDTLV ESHRRLRFGE LSQRHDELVH QVKADKAQS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059075.12e-49PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU43e-24AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A059C7939e-81A0A059C793_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059070.12e-81(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28460.16e-29AGAMOUS-like 59
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]