PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS671735.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 55aa MW: 6132.24 Da PI: 9.1371 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 42 | 2.6e-13 | 4 | 54 | 1 | 46 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkll 46 +C++C+vlr++C++dCv++p++ +++q++++ +++k++G++ +++l+ EcS671735.10 4 SCNGCRVLRKGCSDDCVIRPCLqwiksADSQAHATVFLAKFYGRAGLINLI 54 6*********************9999667889**************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 11.176 | 3 | 55 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.2E-10 | 4 | 54 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSDDCV IRPCLQWIKS ADSQAHATVF LAKFYGRAGL INLIN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066723.1 | 2e-35 | PREDICTED: LOB domain-containing protein 42 | ||||
Swissprot | Q9CA30 | 2e-30 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A059BF38 | 2e-34 | A0A059BF38_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010066723.1 | 7e-35 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-32 | LOB domain-containing protein 42 |