PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS607863.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 89aa MW: 10313.8 Da PI: 9.5061 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.4 | 2.3e-17 | 2 | 79 | 18 | 100 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100 +pk+f++++g++ s + l+ + g +W+++l +++ ++++l+kGW+eF + + g f+vFk++++s+f +v +f+ks EcS607863.10 2 IPKNFLRRCGKD--LSNSVLLKVPGGSTWTIELE-KRNHDMVLLGKGWREFMEHYSIGYGHFIVFKYKENSTF--HVIIFDKS 79 9********977..8889***************5.666678**************************998999..**999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 14.861 | 1 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-21 | 2 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.09E-16 | 2 | 77 | No hit | No description |
SMART | SM01019 | 5.1E-9 | 2 | 79 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-14 | 2 | 78 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.61E-20 | 2 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
GIPKNFLRRC GKDLSNSVLL KVPGGSTWTI ELEKRNHDMV LLGKGWREFM EHYSIGYGHF 60 IVFKYKENST FHVIIFDKSA SEIDYSSSR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018733252.1 | 4e-55 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 | ||||
Refseq | XP_018733254.1 | 2e-55 | PREDICTED: B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | A0A059BC50 | 4e-50 | A0A059BC50_EUCGR; Uncharacterized protein | ||||
STRING | XP_010065902.1 | 6e-51 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1591 | 25 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18960.1 | 7e-19 | B3 family protein |