PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS589601.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 115aa MW: 13692.8 Da PI: 7.4539 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 93.4 | 3.6e-29 | 3 | 112 | 264 | 373 |
GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360 sal+d+++ l +s+er + Ere+ grei+nv+aceg+er+er et ++W+ r ++aGFk++pl+++ +k ++ ++ ++ + + ++e+ ++++l EcS589601.10 3 LSALYDMYDFILDGDSKERLVFEREFHGREIMNVIACEGTERVERPETHKQWQVRHMRAGFKALPLDQELMKLFRSKMKACYHKDFGLNEDGNWMLL 99 589*******************************************************************************888************ PP GRAS 361 gWkdrpLvsvSaW 373 gW++r ++ S+W EcS589601.10 100 GWRGRIVFCSSCW 112 ************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.787 | 1 | 93 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-26 | 3 | 112 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
FQLSALYDMY DFILDGDSKE RLVFEREFHG REIMNVIACE GTERVERPET HKQWQVRHMR 60 AGFKALPLDQ ELMKLFRSKM KACYHKDFGL NEDGNWMLLG WRGRIVFCSS CWVPA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724299.1 | 5e-76 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_018724300.1 | 5e-76 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q3EDH0 | 4e-46 | SCL31_ARATH; Scarecrow-like protein 31 | ||||
TrEMBL | A0A059D4Z4 | 1e-74 | A0A059D4Z4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046395.1 | 2e-73 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32595 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 2e-48 | GRAS family protein |