PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS583641.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 297aa MW: 34413.3 Da PI: 7.997

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS583641.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	238.2	3.6e-73	11	295	85	374
GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180 +++ P+ +++++ a q+I+e v++++++H++Df + +G+QW L+qaL +R+ + l+iT++g s++ +e tg+rL+ fA+ ++vpf+f++ EcS583641.10 11 HQLVPFSQIQQFSAIQTIMENVAEAKKIHVVDFRLLKGVQWTVLMQALMNRReCSLELLKITAIGT---CSQQVIEDTGKRLETFARLFHVPFSFKI 104 5789******************************************9888356679****...689********************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++ +++ +l+ + ++++++E ++V l+++ +++ l+s v+k++k+l+P v+ v+e e++hns+ F +rf e l yysa fd+le+ + r EcS583641.10 105 IMLQDMLELKEDLFDLDKEEFIVVYARRFLKTMIARPERLKS----VMKVIKKLNPCVMMVTEVESNHNSPAFTHRFPEVLFYYSAYFDCLEECMER 197 ******************************88888888....*********************************************** PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 ++e+r+++E ++lg+ i+ ++a+eg+er+ r+ + Wr+ ++++G+ +v l++ qa+l+++k++ + ++e + ++l++gWk+ p+ s+SaW EcS583641.10 198 DDENRTVLESVYLGQGIRTILAAEGEERNIRNIKIDVWRAFFSRFGMVEVDLGTASLYQANLMVKKFPcGSSCTLEMNGKCLIIGWKGTPIHSLSAW 294 ****************************************************************9999*********************** PP GRAS 374 r 374 + EcS583641.10 295 Q 295 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	37.251	1	274	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-70	11	295	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MRAKPPTMLN HQLVPFSQIQ QFSAIQTIME NVAEAKKIHV VDFRLLKGVQ WTVLMQALMN 60 RRECSLELLK ITAIGTCSQQ VIEDTGKRLE TFARLFHVPF SFKIIMLQDM LELKEDLFDL 120 DKEEFIVVYA RRFLKTMIAR PERLKSVMKV IKKLNPCVMM VTEVESNHNS PAFTHRFPEV 180 LFYYSAYFDC LEECMERDDE NRTVLESVYL GQGIRTILAA EGEERNIRNI KIDVWRAFFS 240 RFGMVEVDLG TASLYQANLM VKKFPCGSSC TLEMNGKCLI IGWKGTPIHS LSAWQFN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-35	15	295	88	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064981.2	0.0	PREDICTED: DELLA protein GAI1
TrEMBL	A0A059DB60	0.0	A0A059DB60_EUCGR; Uncharacterized protein
STRING	XP_010064981.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15786	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-45	RGA-like 2