PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS553634.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WRKY

Protein Properties

Length: 78aa MW: 8776.75 Da PI: 8.1059

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS553634.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	51.7	1.7e-16	1	38	23	59
EEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+s+ gCp++k+vers+edp+++ itY+ eHnh+ EcS553634.10 1 GYYRCSSSkGCPARKQVERSREDPTMLLITYSCEHNHP 38 5***998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	6.2E-8	1	39	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	4.7E-16	1	40	IPR003657	WRKY domain
Pfam	PF03106	1.6E-13	1	38	IPR003657	WRKY domain
PROSITE profile	PS50811	19.21	1	40	IPR003657	WRKY domain
SuperFamily	SSF118290	3.14E-13	2	40	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 78 aa Download sequence Send to blast
GYYRCSSSKG CPARKQVERS REDPTMLLIT YSCEHNHPWP AAKNNHHHLN HQNSSAVTSA 60 VEEKPKMPAN LPNPEAEP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057124.1	6e-50	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_018728483.1	5e-50	PREDICTED: probable WRKY transcription factor 65 isoform X2
Refseq	XP_018728484.1	5e-50	PREDICTED: probable WRKY transcription factor 65 isoform X3
Swissprot	Q9LP56	2e-21	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A059C710	1e-47	A0A059C710_EUCGR; Uncharacterized protein
STRING	XP_010057124.1	2e-49	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-23	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]