PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS552635.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bZIP
Protein Properties Length: 159aa    MW: 17681.9 Da    PI: 6.7889
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS552635.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.71.2e-133081556
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56
                  ++ +r+ +NRe+ArrsR RK++ ++e +  v+eL++eN++   +++  +++ 
  EcS552635.10 30 RKRKRMVSNRESARRSRMRKQKHLDEMRAQVAELSKENHQIGTNINITTQHF 81
                  678999*********************************9988887666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.7E-152690IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-102775No hitNo description
PROSITE profilePS5021710.5652891IPR004827Basic-leucine zipper domain
PfamPF001706.5E-103073IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-113081No hitNo description
CDDcd147022.69E-193181No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASPCGTSSG SSLIQNSASE EELQVVMDQR KRKRMVSNRE SARRSRMRKQ KHLDEMRAQV  60
AELSKENHQI GTNINITTQH FLAIQAENSV LGAQVGELSR RLESLNEIIN FLNASNRVFE  120
SGVAQNGPIE PVDEFLNLNP FGLGFGNQAL MASSEMFQC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMVSNRESARRSRMRKQK
24249RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041061.21e-110PREDICTED: bZIP transcription factor 44-like
RefseqXP_010066146.21e-110PREDICTED: bZIP transcription factor 44-like
SwissprotC0Z2L53e-41BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A058ZSA41e-109A0A058ZSA4_EUCGR; Uncharacterized protein
STRINGXP_010041060.11e-110(Eucalyptus grandis)
STRINGXP_010066147.11e-110(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-43basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]