PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS549707.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13858.8 Da PI: 9.1593 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 4.9e-15 | 12 | 96 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 f+ v+ p +v k+ l++p + a++h+ ++++++l+ +W +++ ++++++ l++GWk+F +n+L++ D++vF l ++ s EcS549707.20 12 FLVVMRPTHVYKRFYLSIPTDWATTHMDR--RNQDVILRV-GEGTWHARYRLTGRGSG-GLSSGWKNFTLENNLEQSDVCVFNLADSiS 96 788999********************877..555788877.5569*****88554444.59**********************987643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.8E-20 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.44E-13 | 11 | 107 | No hit | No description |
SuperFamily | SSF101936 | 1.0E-17 | 11 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 5.4E-13 | 12 | 96 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.534 | 12 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-9 | 12 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | ||||
GO:0020037 | Molecular Function | heme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
KLARAAASSD SFLVVMRPTH VYKRFYLSIP TDWATTHMDR RNQDVILRVG EGTWHARYRL 60 TGRGSGGLSS GWKNFTLENN LEQSDVCVFN LADSISKNII LDVTIFRVVE DIVPPTLVNS 120 FSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059782.1 | 2e-84 | PREDICTED: B3 domain-containing protein REM16 isoform X1 | ||||
Refseq | XP_010059783.1 | 1e-84 | PREDICTED: B3 domain-containing protein REM16 isoform X2 | ||||
Refseq | XP_010059786.1 | 1e-84 | PREDICTED: B3 domain-containing protein REM16 isoform X4 | ||||
TrEMBL | A0A059BJD0 | 3e-83 | A0A059BJD0_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059BJJ9 | 3e-83 | A0A059BJJ9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059782.1 | 6e-84 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-19 | B3 family protein |