PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EcS518007.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 161aa MW: 18309.7 Da PI: 8.2904 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 73 | 94 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk+F + L Hir H EcS518007.10 73 VCEFCGKRFMNGKALGGHIRIH 94 6*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.6E-4 | 71 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.593 | 72 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.17E-6 | 73 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.0E-5 | 73 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MDGLRGSQDQ TEVVQLPHQD RGKMAEPDPS ERSESWSQVP KKDPLWIKLK ISKTEQGGEP 60 SEQEEPPSAA VRVCEFCGKR FMNGKALGGH IRIHNQEKNK GSSSKKTDES RLRKQKAKCE 120 KHVHEDLPAL EKGRDFDCSE KDKEKPCCYI CDRNFPSMKS L |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010034254.1 | 1e-111 | PREDICTED: zinc finger protein ZAT9-like | ||||
STRING | XP_010034254.1 | 1e-111 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11455 | 20 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26590.1 | 2e-07 | C2H2-like zinc finger protein |