PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcS506274.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 110aa MW: 12743.5 Da PI: 5.241 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 80 | 4.2e-25 | 8 | 109 | 123 | 222 |
GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldes 217 lQWp L q+L+s++egp +lRiT ++ p g +e++eetg+rL+k++e+++vpfefn++++k++e+++l++L+++++E++aVn+ ++l+de+ EcS506274.20 8 LQWPILVQKLSSQSEGPCKLRITDIELPLGGlrPAERIEETGRRLTKYCERFRVPFEFNFIASKNWESIKLKDLKIRSDETVAVNSLDWFQNLFDET 104 7**************************998899****************************99*************************9****9999 PP GRAS 218 vsles 222 v+ ++ EcS506274.20 105 VDDNN 109 98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 19.678 | 1 | 110 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-22 | 8 | 109 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MSSAVGRLQW PILVQKLSSQ SEGPCKLRIT DIELPLGGLR PAERIEETGR RLTKYCERFR 60 VPFEFNFIAS KNWESIKLKD LKIRSDETVA VNSLDWFQNL FDETVDDNNP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018724301.1 | 5e-54 | PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 34 | ||||
Swissprot | Q3EDH0 | 3e-33 | SCL31_ARATH; Scarecrow-like protein 31 | ||||
TrEMBL | A0A059D5R3 | 1e-52 | A0A059D5R3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010046393.1 | 2e-56 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 1e-35 | GRAS family protein |