PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcS504134.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 110aa MW: 12643.7 Da PI: 11.5502

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcS504134.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.5	8.1e-30	53	102	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ EcS504134.10 53 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 102 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.42E-15	50	106	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.9E-26	51	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	53	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-6	54	102	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 110 aa Download sequence Send to blast
RFGGLSAYQL HQYHHHHHHH SQYAVIGSSE ASHGMMRSRF VSKLPVKRSM RAPRMRWTST 60 LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQVIIITRSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	54	102	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	54	102	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	54	102	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	54	102	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	54	102	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062307.1	6e-67	PREDICTED: transcription repressor KAN1 isoform X1
Refseq	XP_010062308.1	6e-67	PREDICTED: transcription repressor KAN1 isoform X2
Refseq	XP_018730853.1	6e-67	PREDICTED: transcription repressor KAN1 isoform X1
Swissprot	Q93WJ9	2e-39	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A059BU05	1e-65	A0A059BU05_EUCGR; Uncharacterized protein
TrEMBL	A0A059BUZ6	1e-65	A0A059BUZ6_EUCGR; Uncharacterized protein
STRING	XP_010062307.1	2e-66	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6606	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-38	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]