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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | EcC080885.10 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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| Family | GRAS | ||||||||
| Protein Properties | Length: 106aa MW: 12206.2 Da PI: 9.864 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 61.9 | 1.3e-19 | 14 | 99 | 283 | 373 |
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+++E+e+lg++i + v + e +r + Wr+ + GF+pvpls+++++qak+l++ ++++ yrv+ e++ l l+Wk+rpL+++S W
EcC080885.10 14 KVIEQEVLGKRILDSVRQFPCEEWQR----KLWRDGFCLKGFRPVPLSSSNVAQAKYLVSVFSGE-YRVQYEKNRLALCWKSRPLTTASIW 99
579*************9999984444....56*******************************77.************************* PP
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| Protein Features ? help Back to Top | ||||||
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| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03514 | 4.6E-17 | 14 | 99 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 106 aa Download sequence Send to blast |
NVSSFTGGYE MCLKVIEQEV LGKRILDSVR QFPCEEWQRK LWRDGFCLKG FRPVPLSSSN 60 VAQAKYLVSV FSGEYRVQYE KNRLALCWKS RPLTTASIWA PISRAV |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011012014.1 | 2e-41 | PREDICTED: nodulation-signaling pathway 2 protein-like | ||||
| TrEMBL | A0A059AKA9 | 2e-52 | A0A059AKA9_EUCGR; Uncharacterized protein | ||||
| STRING | XP_004308265.1 | 6e-40 | (Fragaria vesca) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G66350.1 | 2e-11 | RGA-like 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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