PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC073219.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | GRAS | ||||||||
Protein Properties | Length: 382aa MW: 43813.8 Da PI: 6.7374 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 126.9 | 2.3e-39 | 6 | 376 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 +lL + ea +++++el + + +r+ e +sp g++++Rla+y+ + ++r ++e + ++ aa+ +f++++P+ +f+h++a EcC073219.10 6 HHLLKAYCEAGNHEQKELMEVISTRIAEKSSPLGEALERLAFYLFRTPENRSDC---------LTRE----SCKNFEAAFLAFYQAFPYGRFAHFAA 89 67888888899999999999***********************99999888665.........2222....35566678889*************** PP GRAS 99 NqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrled 188 N+a+lea+ +g+e++Hi+Dfd+++G+QWp+ ++a a+R++ l++T + e+ + + t++rL++ A+++gv++ + + ++++ EcC073219.10 90 NSALLEAMpDGAETIHIVDFDMGEGIQWPPVIEAVAQRNKT---LKLTSLTCDEERrgqdaqLNWNFDDTKRRLHDHARSFGVKLTVDSM---NIAN 180 ********5567**************************776...8888877655555655444456679*******************98...4444 PP GRAS 189 leleeLrvkp.....gEalaVnlvlqlhrlldesvsles.....erdevLklvksl...sPkvvvvveqe..adh.nsesFlerflealeyysalfd 269 l ++eLr ++ +E ++ n+++ l ++ + +++ + +++L + + + ++++ + + ++ n +++ + f + l+ y ++++ EcC073219.10 181 L-VNELRKRNegdanKEWMVFNCMVGLPHTGRTTTTRRVndffgVAKAFLACRADWfarTAGIITFGDGNgfEKLkNCSTLGDFFDNLLRRYHSILE 276 4.4555444445555**************9966555444334444555555544332225679*****996434469999999999*********** PP GRAS 270 sleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365 s+++ +p++ e ri +E ++++ i+++ ++++ ++l + G+ +++ + + +a+ +l+ s + ++ e+ ++++l Wk++ EcC073219.10 277 SMQSDFPPQLsESRIAMEMLFVAPFISSLSWLHRW------GEMRNGTDALVAQGLDRLRIARESVVEAQEMLKGKTSYEVKLGEQGNEMFLEWKGH 367 **888877653999999999888888876444443......45666689**************************997778888************* PP GRAS 366 pLvsvSaWr 374 +L +S+W+ EcC073219.10 368 ELARFSSWE 376 ********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.505 | 1 | 356 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-37 | 6 | 376 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
NLLSLHHLLK AYCEAGNHEQ KELMEVISTR IAEKSSPLGE ALERLAFYLF RTPENRSDCL 60 TRESCKNFEA AFLAFYQAFP YGRFAHFAAN SALLEAMPDG AETIHIVDFD MGEGIQWPPV 120 IEAVAQRNKT LKLTSLTCDE ERRGQDAQLN WNFDDTKRRL HDHARSFGVK LTVDSMNIAN 180 LVNELRKRNE GDANKEWMVF NCMVGLPHTG RTTTTRRVND FFGVAKAFLA CRADWFARTA 240 GIITFGDGNG FEKLKNCSTL GDFFDNLLRR YHSILESMQS DFPPQLSESR IAMEMLFVAP 300 FISSLSWLHR WGEMRNGTDA LVAQGLDRLR IARESVVEAQ EMLKGKTSYE VKLGEQGNEM 360 FLEWKGHELA RFSSWEYRPK RW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 8e-14 | 5 | 278 | 5 | 269 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010066039.1 | 0.0 | PREDICTED: nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A059DCA0 | 0.0 | A0A059DCA0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010066039.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14344 | 10 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-16 | GRAS family protein |