PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC073219.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 382aa    MW: 43813.8 Da    PI: 6.7374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC073219.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS126.92.3e-3963762374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lL +  ea +++++el + + +r+ e +sp g++++Rla+y+ +  ++r             ++e    + ++  aa+ +f++++P+ +f+h++a
  EcC073219.10   6 HHLLKAYCEAGNHEQKELMEVISTRIAEKSSPLGEALERLAFYLFRTPENRSDC---------LTRE----SCKNFEAAFLAFYQAFPYGRFAHFAA 89 
                   67888888899999999999***********************99999888665.........2222....35566678889*************** PP

          GRAS  99 NqaIleav.egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvlvakrled 188
                   N+a+lea+ +g+e++Hi+Dfd+++G+QWp+ ++a a+R++    l++T +   e+        + +   t++rL++ A+++gv++  + +   ++++
  EcC073219.10  90 NSALLEAMpDGAETIHIVDFDMGEGIQWPPVIEAVAQRNKT---LKLTSLTCDEERrgqdaqLNWNFDDTKRRLHDHARSFGVKLTVDSM---NIAN 180
                   ********5567**************************776...8888877655555655444456679*******************98...4444 PP

          GRAS 189 leleeLrvkp.....gEalaVnlvlqlhrlldesvsles.....erdevLklvksl...sPkvvvvveqe..adh.nsesFlerflealeyysalfd 269
                   l ++eLr ++     +E ++ n+++ l ++ + +++ +        +++L +  +     + ++++ + +   ++ n +++ + f + l+ y ++++
  EcC073219.10 181 L-VNELRKRNegdanKEWMVFNCMVGLPHTGRTTTTRRVndffgVAKAFLACRADWfarTAGIITFGDGNgfEKLkNCSTLGDFFDNLLRRYHSILE 276
                   4.4555444445555**************9966555444334444555555544332225679*****996434469999999999*********** PP

          GRAS 270 sleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                   s+++ +p++  e ri +E  ++++ i+++             ++++  ++l + G+  +++  + + +a+ +l+   s + ++ e+ ++++l Wk++
  EcC073219.10 277 SMQSDFPPQLsESRIAMEMLFVAPFISSLSWLHRW------GEMRNGTDALVAQGLDRLRIARESVVEAQEMLKGKTSYEVKLGEQGNEMFLEWKGH 367
                   **888877653999999999888888876444443......45666689**************************997778888************* PP

          GRAS 366 pLvsvSaWr 374
                   +L  +S+W+
  EcC073219.10 368 ELARFSSWE 376
                   ********5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098524.5051356IPR005202Transcription factor GRAS
PfamPF035148.0E-376376IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
NLLSLHHLLK AYCEAGNHEQ KELMEVISTR IAEKSSPLGE ALERLAFYLF RTPENRSDCL  60
TRESCKNFEA AFLAFYQAFP YGRFAHFAAN SALLEAMPDG AETIHIVDFD MGEGIQWPPV  120
IEAVAQRNKT LKLTSLTCDE ERRGQDAQLN WNFDDTKRRL HDHARSFGVK LTVDSMNIAN  180
LVNELRKRNE GDANKEWMVF NCMVGLPHTG RTTTTRRVND FFGVAKAFLA CRADWFARTA  240
GIITFGDGNG FEKLKNCSTL GDFFDNLLRR YHSILESMQS DFPPQLSESR IAMEMLFVAP  300
FISSLSWLHR WGEMRNGTDA LVAQGLDRLR IARESVVEAQ EMLKGKTSYE VKLGEQGNEM  360
FLEWKGHELA RFSSWEYRPK RW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-1452785269GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066039.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059DCA00.0A0A059DCA0_EUCGR; Uncharacterized protein
STRINGXP_010066039.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM143441021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-16GRAS family protein