PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC071875.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26071.8 Da PI: 4.2373 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.4 | 5.7e-16 | 46 | 93 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 ykGVr+++ +g+++AeIrdp+ r r++lg++ taeeAa a+ + ++++ EcC071875.10 46 AYKGVRRRP-WGKFAAEIRDPT----RkVRVWLGTYSTAEEAALAYQKKKLEI 93 69*******.**********84....35******************9988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.88E-22 | 45 | 86 | No hit | No description |
SuperFamily | SSF54171 | 2.75E-16 | 45 | 93 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.4E-20 | 46 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 46 | 93 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.452 | 46 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-22 | 46 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
EIVIPCARHE SCEGISPCLA NNCQKCSTSG NDVLSEASMR ARGSSAYKGV RRRPWGKFAA 60 EIRDPTRKVR VWLGTYSTAE EAALAYQKKK LEIDQQMESR RKEEEEEDSI HDLKGETEDD 120 RNDLFCHQSP SSVLDAHKSS SLGRGQDELV FPEQDQLIQA FVDQAPSGST SQELGLGCEG 180 SFMLDNEFGS FFDGFDLTRD LFNDRGVYDL PDIDLDLGSD ELAWIDGVID MACL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-16 | 47 | 88 | 3 | 45 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036883.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor CRF3-like | ||||
STRING | XP_010036883.1 | 1e-156 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 3e-21 | ERF family protein |