PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC067235.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 336aa MW: 35438.7 Da PI: 6.4644

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC067235.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	149.3	3.6e-46	190	333	1	153
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel.aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAe v+ gd++la +l+++++ l a d + + ++a yf AL +rl++ l + ++s e+ ++ f+e++P+lkf+h EcC067235.10 190 LVHALMTCAESVQRGDASLAGSLVEEMRALlARVDTsRGIGKVAGYFIDALGRRLLG--------LGSAPAS---AFENEVLYHHFYEACPYLKFAH 275 689************************9644444589**************........3333333...3445567889******** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153 +taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa Rp+gpp lR+Tg+g+p+++ EcC067235.10 276 FTANQAILEAFDGHDCVHVIDFNLMHGLQWPALIQALALRPRGPPLLRLTGIGPPSPD 333 ***************************************************98865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01129	9.5E-21	50	122	No hit	No description
Pfam	PF12041	1.1E-30	50	113	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	32.702	164	336	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-43	190	333	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MGPFDPSAAA AAAAAAAAAA SSSSSSSCSG GSAPKRHHHH HHHHPPPDLD GHLACAGYKV 60 RSSELHHVAQ RLERLETALV NSAAHIPHLA SDAVHYNPSD LASWVDSMLS ELPSSSFSSP 120 CLPSGFPDPY SPAAAAATAA AALGGGWVDQ PSCSPHPQPH QNVVVPQQQQ QQQQQLTVVT 180 ALEEDSGIQL VHALMTCAES VQRGDASLAG SLVEEMRALL ARVDTSRGIG KVAGYFIDAL 240 GRRLLGLGSA PASAFENEVL YHHFYEACPY LKFAHFTANQ AILEAFDGHD CVHVIDFNLM 300 HGLQWPALIQ ALALRPRGPP LLRLTGIGPP SPDGRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-23	190	332	4	150	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010049952.1	1e-173	PREDICTED: DELLA protein GAI
TrEMBL	A0A059CXT5	1e-171	A0A059CXT5_EUCGR; Uncharacterized protein
STRING	XP_010049952.1	1e-172	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16045	10	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-43	GRAS family protein