PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC059962.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 86aa    MW: 9940.44 Da    PI: 10.1012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC059962.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.3e-192771899
                  --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +pkkf++++gg+   s  + l+ +sg+ Wev+l   ++ ++++l++GW +Fvk   ++ g f+vF+++g s f  +v +f+k
  EcC059962.10  2 IPKKFVRKYGGN--LSDLVFLQVPSGQAWEVEL--ARRTDGVWLRRGWPDFVKHYAIEHGHFLVFRYEGGSAF--RVVIFDK 77
                  9********999..888999999**********..9********************************99999..9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086315.115178IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22278IPR015300DNA-binding pseudobarrel domain
CDDcd100179.00E-17276No hitNo description
SuperFamilySSF1019361.18E-21278IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.6E-6278IPR003340B3 DNA binding domain
PfamPF023622.7E-16277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
GIPKKFVRKY GGNLSDLVFL QVPSGQAWEV ELARRTDGVW LRRGWPDFVK HYAIEHGHFL  60
VFRYEGGSAF RVVIFDKSAS EIKYPI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041490.14e-56PREDICTED: B3 domain-containing protein At3g18960
TrEMBLA0A058ZRB62e-53A0A058ZRB6_EUCGR; Uncharacterized protein
STRINGXP_010041490.12e-55(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15912578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-24B3 family protein