PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055122.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 392aa    MW: 40510.2 Da    PI: 7.7256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055122.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.13.9e-10103127126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt+lC+ f++ GtC+y  +C+FaH+
  EcC055122.60 103 FKTKLCCKFRA-GTCPYVTNCNFAHS 127
                   69*********.*************8 PP
2zf-CCCH18.53.6e-06177202126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   yk + C+ f+    C+yGd+C+F H+
  EcC055122.60 177 YKGRHCKKFYTEEGCPYGDSCTFLHD 202
                   77888********************7 PP
3zf-CCCH41.62e-13272297126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   +kt++C+ +  tG+C++G++C+FaHg
  EcC055122.60 272 WKTRICNKWELTGYCPFGNKCHFAHG 297
                   8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.8E-14100135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8100133IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.131102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.003102128IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-9175204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7175204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.086176203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-17266301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10268302IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9271298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225271299IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10272297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006281Biological ProcessDNA repair
GO:0006506Biological ProcessGPI anchor biosynthetic process
GO:0006886Biological Processintracellular protein transport
GO:0009733Biological Processresponse to auxin
GO:0016192Biological Processvesicle-mediated transport
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0030131Cellular Componentclathrin adaptor complex
GO:0003677Molecular FunctionDNA binding
GO:0004518Molecular Functionnuclease activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016746Molecular Functiontransferase activity, transferring acyl groups
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDYGRESGFG GGNVVHVITG GGPNESWMQN PAADQGVWAS EDEYRVWNGG LTPSSDAPSS  60
NSSYDGGRQS QTRSGSEPPS KKSRNGSDSA VSSRSKAIGK MFFKTKLCCK FRAGTCPYVT  120
NCNFAHSIEE LRRPPPNWQE IVAAHEEEKG VASEPREEFQ IPSLGSSGFS GESQRSYKGR  180
HCKKFYTEEG CPYGDSCTFL HDEQSKNRES VAISLGPGGY SGGGGGGGGG GSGGGGGGGG  240
GGGGGGGGGG GGVGGGGGVG AGAGSNVKPS NWKTRICNKW ELTGYCPFGN KCHFAHGAAE  300
LHRYGGGLVE SEARDATSAP ADPKQGGAPS KIPADTAVAS AVSVPHTDAY HIGVPSQRSA  360
IIIQRPGQRT HQKWKGPDKI SRIYGDWIDD VE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220231SGGGGGGGGGGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730615.10.0PREDICTED: zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM31e-132C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A059C0M60.0A0A059C0M6_EUCGR; Uncharacterized protein
STRINGXP_010055309.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-130C3H family protein