PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055092.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 156aa    MW: 17895.7 Da    PI: 7.0879
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055092.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1272.2e-394154225374
          GRAS 225 devLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                   ++++k++k+l+P v+vvve +++hns++F +rf+e l +ysa fd+l++ + r++e+r+++E ++ g++i+ ++a eg+er+ r  +   Wr+ +++
  EcC055092.70   4 ESIMKVIKKLNPCVMVVVEVDSNHNSPDFSNRFAEVLFFYSAYFDCLKECMERADENRTFLESMYYGQAIRTALADEGEERTIRSVKIDVWRAFFSR 100
                   6799********************************************************************************************* PP

          GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +G+ +v l+     qa+l+ +k++ +   ++  + ++l++gWk+ pL+s+SaWr
  EcC055092.70 101 FGMVEVDLGMASLYQADLMAKKFPsGSSCTLGMNGKCLIMGWKGTPLFSLSAWR 154
                   ************************87889999*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.2311133IPR005202Transcription factor GRAS
PfamPF035147.5E-374154IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002215Biological Processdefense response to nematode
GO:0005975Biological Processcarbohydrate metabolic process
GO:0009651Biological Processresponse to salt stress
GO:0009817Biological Processdefense response to fungus, incompatible interaction
GO:0005618Cellular Componentcell wall
GO:0005774Cellular Componentvacuolar membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
ERLESIMKVI KKLNPCVMVV VEVDSNHNSP DFSNRFAEVL FFYSAYFDCL KECMERADEN  60
RTFLESMYYG QAIRTALADE GEERTIRSVK IDVWRAFFSR FGMVEVDLGM ASLYQADLMA  120
KKFPSGSSCT LGMNGKCLIM GWKGTPLFSL SAWRFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-169153237378Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064972.15e-95PREDICTED: DELLA protein RGL1
TrEMBLA0A059DBM41e-93A0A059DBM4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010064972.12e-94(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.12e-26GRAS family protein