PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055083.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 687aa    MW: 75981.2 Da    PI: 5.8019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055083.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS443.81.2e-1353226861374
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfsh 95 
                   lv+lLl+cAeav+++d  la+++L +l+ ++sp gd+mqR+a++fteAL+arl+   ++  ++++ +p +  + ns e l++++++++++P++kf+h
  EcC055083.70 322 LVHLLLACAEAVAKDDYMLARKYLHHLNRIVSPFGDSMQRVASCFTEALSARLTAtlNTRPTSSSAKPFTPFPPNSPEILKYYQILYQACPYIKFAH 418
                   68****************************************************955566677777777777789********************** PP

          GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   +taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    + e++ etg+ L+++A++l++pfef++ v ++ledl+++
  EcC055083.70 419 FTANQAIFEAIEFEERVHVIDLDIHQGYQWPAFMQALAARPAGAPFLRITGVGP----EIEAVCETGRCLTELAHSLHIPFEFHP-VGEQLEDLKPH 510
                   ******************************************************....99*************************.7********** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+ + gEalaV++v +lhr++   ++l s    +L+++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p++s +r+ vE+ +
  EcC055083.70 511 MLNRRVGEALAVSSVNRLHRVP--AHCLGS----LLSMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPDSAQRAQVEQYI 601
                   *********************9..556666....*************************************************************** PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +++ei+nvvacegaer+ rhe+lekWr+++e  GFk vpls +a++q k ll  ++sdgyr+ e++g+l+lgW+dr+++++SaWr
  EcC055083.70 602 FAPEIRNVVACEGAERTVRHERLEKWRKAMEGKGFKGVPLSGNAVTQSKILLDLYSSDGYRLTEDKGCLLLGWQDRAIMAASAWR 686
                   ************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.535296666IPR005202Transcription factor GRAS
PfamPF035144.0E-133322686IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0006887Biological Processexocytosis
GO:0045454Biological Processcell redox homeostasis
GO:0000145Cellular Componentexocyst
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0009055Molecular Functionelectron carrier activity
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGSLKSESSC ASKNHLSTSP TGSSSLSLAD SKKTPPPTEM DRSGSLTPPS LSFPSLKAQM  60
EEEAEVQSPT TALLESFFSD QLDGDFMISS PVRAPSGTDG NLSSLPHSPN FSYINSLTYA  120
NNIQGQSLSW YSPPRLFSSP LGPLRGKGMS PLHKVNNSST ITNNNNNNSS SNSNINNNDN  180
CSSNSNNNHN QYMQVGSNLA LPAIEDYLED YQKDEFGVYP SQFDASPMLE CVSVGPRYGG  240
PMSETVGSAS QLTQEGDVYH QMSCVSSSQM PLSQQLQQEH LHEKWQQQHD QLTHQHQQNM  300
ADTLMMPIAI VSEQEQDSGL QLVHLLLACA EAVAKDDYML ARKYLHHLNR IVSPFGDSMQ  360
RVASCFTEAL SARLTATLNT RPTSSSAKPF TPFPPNSPEI LKYYQILYQA CPYIKFAHFT  420
ANQAIFEAIE FEERVHVIDL DIHQGYQWPA FMQALAARPA GAPFLRITGV GPEIEAVCET  480
GRCLTELAHS LHIPFEFHPV GEQLEDLKPH MLNRRVGEAL AVSSVNRLHR VPAHCLGSLL  540
SMIRDQAPNI VTLVEQEASH NGPYFLGRFL EALHYYSAIF DSLDATFPPD SAQRAQVEQY  600
IFAPEIRNVV ACEGAERTVR HERLEKWRKA MEGKGFKGVP LSGNAVTQSK ILLDLYSSDG  660
YRLTEDKGCL LLGWQDRAIM AASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-973116857378Protein SCARECROW
5b3h_A3e-973116856377Protein SCARECROW
5b3h_D3e-973116856377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641856.10.0scarecrow-like protein 21
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A059B3200.0A0A059B320_EUCGR; Uncharacterized protein (Fragment)
STRINGcassava4.1_032757m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-100RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]