PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC055069.60
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 360aa    MW: 38996.6 Da    PI: 6.2624
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC055069.60genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.2e-28178238259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                   +Dgy+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++e++Y+g+H+++
  EcC055069.60 178 EDGYTWRKYGQKEILGSKFPRGYYRCTHQklyHCPAKKQVQRLDNDPFTFEVMYRGDHTCH 238
                   7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.5E-27173239IPR003657WRKY domain
SuperFamilySSF1182902.62E-25175239IPR003657WRKY domain
SMARTSM007744.0E-36177239IPR003657WRKY domain
PfamPF031067.4E-26178238IPR003657WRKY domain
PROSITE profilePS5081120.621178240IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0006412Biological Processtranslation
GO:0006468Biological Processprotein phosphorylation
GO:0006817Biological Processphosphate ion transport
GO:0015074Biological ProcessDNA integration
GO:0019243Biological Processmethylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
GO:0032784Biological Processregulation of DNA-templated transcription, elongation
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0000049Molecular FunctiontRNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004416Molecular Functionhydroxyacylglutathione hydrolase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005315Molecular Functioninorganic phosphate transmembrane transporter activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDDTINLILR GCSLARDLEH NLPNLANQPN LLAVSCEQIV QVFSVIRERL RHNPLDAGSX  60
XXXXXXSEVQ AGSGSSNLEE WLKSSGYAQS ILQQTQCWAG TSGARTGNTE GPMEAMGEGP  120
FVRPGGGGEE MQAPDVSSDR RRSASSSSER TRRRNSDAEK RTIRVPAPRM GNTEIPPEDG  180
YTWRKYGQKE ILGSKFPRGY YRCTHQKLYH CPAKKQVQRL DNDPFTFEVM YRGDHTCHMS  240
STAPSIPPPP PASLDMAPIA ATQPISASVS APLPRWLPVD FGMGGASGSR NMAVGGSGSG  300
CGSEAGPSTS GSRRGKEAEY PLVADLADAM FNSGSSSTNS MDFIFPSSTE DKREEDDKKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-19178237968OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034137.10.0PREDICTED: WRKY transcription factor 55
TrEMBLA0A059A9C00.0A0A059A9C0_EUCGR; Uncharacterized protein
STRINGXP_010034137.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-46WRKY DNA-binding protein 55