PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC055061.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 184aa MW: 20715.3 Da PI: 10.1895 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.6 | 5.8e-17 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+s r +tfskR+ i KKA+EL +LC+aev + fs++g+ + + EcC055061.30 15 KQIENESSRLITFSKRKSSINKKASELVTLCGAEVGFVAFSPSGNPFSF 63 78*****************************************986666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.7E-16 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-13 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.007 | 14 | 67 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-21 | 14 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-20 | 17 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-13 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-13 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGRQTGENP RPGMKQIENE SSRLITFSKR KSSINKKASE LVTLCGAEVG FVAFSPSGNP 60 FSFAHPSIDA VANRFLNRNP SPNNSSQPLV ESYRQAKCKE LNQQHDELYN QIKAEKAQGK 120 ALKRLTKGKS DAAWWEAPIE ELNREELYQM KGRMEELRRS LKRSINQKFQ GEASGSSQGQ 180 ELEK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 163 | RRSLKRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059060.1 | 1e-129 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A059C7K0 | 1e-104 | A0A059C7K0_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010059060.1 | 1e-129 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 4e-37 | AGAMOUS-like 61 |