PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054979.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 494aa    MW: 54597.4 Da    PI: 6.0023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054979.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.91.3e-1051074861373
          GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar....svselykalppsetseknsseelaalklfsevsPi 90 
                   lv+lL+++Aea++  ++   la+ +L rl+el+sp++ ++m+Rlaa+fteAL+  l +    ++++l +  p +++++++++++laa++l +++sP+
  EcC054979.10 107 LVHLLMAAAEALTGVNKCheLARVILVRLKELVSPTDgTNMERLAAHFTEALQGLLEGagggHGKHLISGGPQRNDHHHHQTDVLAAFQLMQDMSPY 203
                   68***********9665444************9987769*****************983223456677777778888788***************** PP

          GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg..ppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlva 183
                   +kf+h+taNqaIleav +++rvHi+D+di++G+QW++L+qaL sR++g  +p+lRiT++++  +g  s  +++etg+rL+ fA+++g pf+f+    
  EcC054979.10 204 VKFGHFTANQAILEAVTQHRRVHIVDYDIMEGIQWASLMQALVSRKNGplAPHLRITALSRGGNGrrSIGTIQETGRRLTAFATSIGQPFSFHQCRL 300
                   **********************************************884569*********888898999************************999 PP

          GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpres 279
                   ++ e++++++L++ +gEal+ n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e+   +++ F+ rf+++l++ysal+dslea++p + 
  EcC054979.10 301 DSDETFRPSSLKLVRGEALIFNCMLHLPHFSYRAPES---VASFLSGAKTLNPRLVTLVEEELGPiGDQGFVSRFIDSLHHYSALYDSLEAGFPMQR 394
                   9****************************98555444...459*******************8888******************************* PP

          GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                   ++r+ vEr++lg++iv  +    +      e+ ++Wre+l++ GF+pv +s  + +qaklll  ++ dgyrvee  s+ lvlgWk+r+L+s+S W
  EcC054979.10 395 RARALVERVFLGPRIVGSLGRIYRT--RGDEEGGSWREWLGATGFRPVDISFANHCQAKLLLGLFN-DGYRVEELaSNRLVLGWKSRRLLSASIW 486
                   ******************9999887..456678*********************************.******8769999*************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.30981467IPR005202Transcription factor GRAS
PfamPF035144.5E-103107486IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0022857Molecular Functiontransmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MAMAIDDATE LDFSAYSTST TTTTTTATTD DEYGCNWNDW SPVVDWNTLS GGQDDFQDLI  60
ESMIDESGLQ PARSAVNYQE GCNSPSTDTT MFTDEEPSGD DLKGLRLVHL LMAAAEALTG  120
VNKCHELARV ILVRLKELVS PTDGTNMERL AAHFTEALQG LLEGAGGGHG KHLISGGPQR  180
NDHHHHQTDV LAAFQLMQDM SPYVKFGHFT ANQAILEAVT QHRRVHIVDY DIMEGIQWAS  240
LMQALVSRKN GPLAPHLRIT ALSRGGNGRR SIGTIQETGR RLTAFATSIG QPFSFHQCRL  300
DSDETFRPSS LKLVRGEALI FNCMLHLPHF SYRAPESVAS FLSGAKTLNP RLVTLVEEEL  360
GPIGDQGFVS RFIDSLHHYS ALYDSLEAGF PMQRRARALV ERVFLGPRIV GSLGRIYRTR  420
GDEEGGSWRE WLGATGFRPV DISFANHCQA KLLLGLFNDG YRVEELASNR LVLGWKSRRL  480
LSASIWSSPF DSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-5711548727379Protein SCARECROW
5b3h_A3e-5711548726378Protein SCARECROW
5b3h_D3e-5711548726378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042750.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
STRINGXP_010042750.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-178GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]