PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054968.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 515aa    MW: 57225.2 Da    PI: 5.4785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054968.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.57.1e-1291465152374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                   +e L +cA+av+++d+ +++ l+++l+ ++s +gdp+qRl ay++e+L arla s+s++ykal+++e +    +e l++++++++++P++kf+++ a
  EcC054968.20 146 KEILCACAKAVEDNDTLKIECLISELRPMVSVSGDPIQRLSAYMLEGLIARLACSGSSIYKALKCKEPA---GAELLSYMHILYDICPYFKFGYMSA 239
                   789*****************************************************************9...9************************ PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                   N  I e ++ e+ +HiiDf+i qG+QW++L+qaLa+Rp+gpp +RiTg++++ s   +   le +g+rL+++Ae+++vpf+f++      +++ + +
  EcC054968.20 240 NGSIAEVMKDENSIHIIDFQIAQGGQWITLIQALAARPGGPPCIRITGIDDSGSAyaRGGGLEIVGQRLSRLAEACRVPFQFHA-CGVPASEVGIGN 335
                   ***************************************************877788999************************.7999******** PP

          GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                   L ++ +Ea+aVn+ l lh+++desv+++++rd+++++ kslsPkvv++veqe+++n+++F+ rfle+l+yys++f+s+++ lpre++er++vE+++l
  EcC054968.20 336 LLIRADEAIAVNFPLLLHHIPDESVCSQNHRDRLIRMAKSLSPKVVTLVEQESNTNTAPFFLRFLETLNYYSSVFESIDVALPREHKERVNVEQHCL 432
                   ************************************************************************************************* PP

          GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   +r+ivn++aceg er+erhe l+kWr+r+ +aGF+p+pls+++++++k+ll+ + +  y++ee++g+l+lgW++rpLv+ +aWr
  EcC054968.20 433 ARDIVNLIACEGMERVERHELLGKWRMRFIMAGFSPYPLSSFVNATIKSLLSSYCD-KYTLEERDGALYLGWMNRPLVASCAWR 515
                   ******************************************************95.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.356119496IPR005202Transcription factor GRAS
PfamPF035142.5E-126146515IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0003690Molecular Functiondouble-stranded DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005507Molecular Functioncopper ion binding
GO:0005524Molecular FunctionATP binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0051082Molecular Functionunfolded protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MQASQKPRLW DASDRFYNLP AKELESSHWS SITNFDHLSC SDESSQGNCM LESSSGSAPY  60
HVNDSPSTVR FSPDGSPRAK RASVPDSSAQ DHLNDLELKV RELETVMLGP SSDMPHTVDI  120
NSLVESGQMS QETETLMEII SRRDLKEILC ACAKAVEDND TLKIECLISE LRPMVSVSGD  180
PIQRLSAYML EGLIARLACS GSSIYKALKC KEPAGAELLS YMHILYDICP YFKFGYMSAN  240
GSIAEVMKDE NSIHIIDFQI AQGGQWITLI QALAARPGGP PCIRITGIDD SGSAYARGGG  300
LEIVGQRLSR LAEACRVPFQ FHACGVPASE VGIGNLLIRA DEAIAVNFPL LLHHIPDESV  360
CSQNHRDRLI RMAKSLSPKV VTLVEQESNT NTAPFFLRFL ETLNYYSSVF ESIDVALPRE  420
HKERVNVEQH CLARDIVNLI ACEGMERVER HELLGKWRMR FIMAGFSPYP LSSFVNATIK  480
SLLSSYCDKY TLEERDGALY LGWMNRPLVA SCAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-651495158375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010063084.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010063085.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_010063086.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A059BW960.0A0A059BW96_EUCGR; Uncharacterized protein
STRINGXP_010063084.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]