PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054928.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 28348.3 Da PI: 9.355 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.9 | 5.9e-30 | 87 | 144 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK+ k+++ pr+YYrC++a gCpvkkkv+rsaed ++++ tYeg Hnh EcC054928.30 87 RDGYQWRKYGQKVTKDNPSPRAYYRCSMApGCPVKKKVQRSAEDRTLLVATYEGLHNH 144 7***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.6E-29 | 76 | 145 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.062 | 81 | 147 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-26 | 83 | 145 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-33 | 86 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-24 | 88 | 144 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006281 | Biological Process | DNA repair | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MSSNTSGQEK ILRDELERLR KENETLKVMV EVIGSKCSVL ETHLRESHCP PYHHDSNKRA 60 RIEEFPFTKS SKICVKVDEE DKSLVVRDGY QWRKYGQKVT KDNPSPRAYY RCSMAPGCPV 120 KKKVQRSAED RTLLVATYEG LHNHGTVDVP NRDRLPLRSD QSPRGQLVNR DLTLMPMMSP 180 SSIQPPIALD LGLSRSSFPQ DPKPSYLSKN LSFGNRSSDC VKIEEYAASL VRDPKFTEAL 240 ALTVARTLNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-22 | 85 | 144 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010051128.1 | 0.0 | PREDICTED: WRKY transcription factor WRKY76 | ||||
TrEMBL | A0A059CS30 | 1e-180 | A0A059CS30_EUCGR; Uncharacterized protein | ||||
TrEMBL | A0A059CSD5 | 1e-180 | A0A059CSD5_EUCGR; Uncharacterized protein | ||||
STRING | XP_010051128.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.1 | 3e-39 | WRKY DNA-binding protein 18 |