PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054844.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 337aa    MW: 38117.1 Da    PI: 6.3012
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054844.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.63.6e-12200225126
                   --S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                   y   +C+++ +tG+C yGd CkF+H+
  EcC054844.20 200 YQPDICKDYKETGYCGYGDACKFMHD 225
                   67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.4E-9198230IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7199226IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577199227IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10200225IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-12200230IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.101.4E-13260318IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139201.6E-8276317No hitNo description
SuperFamilySSF578502.99E-13276319No hitNo description
CDDcd001621.88E-8277318No hitNo description
SMARTSM001848.1E-5277314IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.571277315IPR001841Zinc finger, RING-type
PROSITE patternPS005180292301IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MADSGEAKQA EPGNLEETGD KQTSEQVCSF FRKPSRNKNI RKRMVEEDDD EDSKTESSVL  60
HNQKKPQRTG NKLYFSTGSS KSSVSAESKV DSDKPIFQFE SSKEIQVEHD SRATATLETE  120
TEFSKDARAI RERVLKQATN EISGKSKGTG DEKLYKGVHG YTDYKAGFRR EQTISSEKAG  180
GAHGPLRASA HIRVSARFDY QPDICKDYKE TGYCGYGDAC KFMHDRGDYK SGWQLEKEWD  240
EAEKARKRNL ALGGNDEDEE DVDQAEDEED DELPFACFIC REPFVDPVVT KCKHYFCEHC  300
ALKHHARNKK CFVCNKPTLG TFNVAHEIKK KMAAEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6473322317RING finger protein 113A
5z58_M4e-6473322317RING finger protein 113A
6ff4_t4e-6473322317RING finger protein 113A
6ff7_t4e-6473322317RING finger protein 113A
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010052808.10.0PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_010052809.10.0PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_010052810.10.0PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
RefseqXP_018727625.10.0PREDICTED: zinc finger CCCH domain-containing protein 1 isoform X3
SwissprotQ8GX841e-165C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A059CEL10.0A0A059CEL1_EUCGR; Uncharacterized protein
STRINGXP_010052807.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-155C3H family protein