PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054811.230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 180aa MW: 20463.4 Da PI: 6.6696 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31.9 | 2.4e-10 | 61 | 148 | 1 | 81 |
EEEE-..-HHHHT.T-EE--H.HH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlks.grlvlpk.kfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt+sd +rl + k +fa+++ + + e ++ ++ ++ g+ + ++++++ ++ ++v+t+GW+ Fvk+n+L++ D+v EcC054811.230 61 FEKQLTTSDIIGIqSRLLVNKtDFATSIlpllekDDDIEVGIPVKAFNPAGKAYPMTFKIWCGR-SHVITSGWNLFVKDNRLEVSDIVR 148 889999999876644555554156777799998844445567789999**********766554.69*******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-14 | 60 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.57E-13 | 61 | 164 | No hit | No description |
SMART | SM01019 | 0.0043 | 61 | 168 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-13 | 61 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.543 | 108 | 168 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006108 | Biological Process | malate metabolic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006396 | Biological Process | RNA processing | ||||
GO:0006486 | Biological Process | protein glycosylation | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0055085 | Biological Process | transmembrane transport | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004471 | Molecular Function | malate dehydrogenase (decarboxylating) (NAD+) activity | ||||
GO:0004576 | Molecular Function | oligosaccharyl transferase activity | ||||
GO:0004616 | Molecular Function | phosphogluconate dehydrogenase (decarboxylating) activity | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0008173 | Molecular Function | RNA methyltransferase activity | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0042626 | Molecular Function | ATPase activity, coupled to transmembrane movement of substances | ||||
GO:0051287 | Molecular Function | NAD binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MELKNEQGVR PMQQHRQSKT IQASSCPSRP QHDPQHSATG LHLVRIVDTL IDSIGDCSEP 60 FEKQLTTSDI IGIQSRLLVN KTDFATSILP LLEKDDDIEV GIPVKAFNPA GKAYPMTFKI 120 WCGRSHVITS GWNLFVKDNR LEVSDIVRVW AFRDVWTREL CLLISSRKPE VQQPIEKEET |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010050479.1 | 1e-128 | PREDICTED: putative B3 domain-containing protein At4g03160 | ||||
TrEMBL | A0A059CMH9 | 1e-126 | A0A059CMH9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010050479.1 | 1e-127 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 7e-22 | B3 family protein |