PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054799.90
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 503aa    MW: 56784.5 Da    PI: 4.6641
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054799.90genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS103.53e-321274934373
          GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                   lL +  ea+++++  l + +   + e a+p g+ m Rla+y+      r ++      + ++ ++      ++   a  + +++ P  +f+h++aN+
  EcC054799.90 127 LLKAYGEAMENEQSDLLDVISGCIDESANPLGNVMDRLAFYMFD----RKQG-----LNYIKQEA-----FKNFKPASYAIYQILPHGRFAHFAANS 209
                   55566666666666677777777777788888888888888754....2222.....11122222.....333444555689*************** PP

          GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                    Ile++ ++ ++vH+iDfd+++ +QW aL++++a   +    lRiT ++  +++   e ee ++rL++ A+++gv++  +    +r+++l  e+ r+
  EcC054799.90 210 VILESLPKDiKAVHVIDFDMGEAFQWWALIESMAMV-RRHVALRITSMKWDDEKGLIEFEEAKRRLQEQAKAVGVELVVEE---SRIDALASEMKRL 302
                   *******999************************74.34569********9999**********************97776...6777775555444 PP

          GRAS 197 kp.........gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPk.....vvvvveqe..adh.nsesFlerflealeyysalfdsleak 274
                   ++            ++ n+   l ++       +s     e+L+l k++ ++     +++    e  ++  n + F e f + ++yy a+++s+e+ 
  EcC054799.90 303 SQrggnnndmrSQWMVFNVTKGLPHTG----RRRSetLVGEFLRLAKEVIAHpaiggIITSGRGEtsCESrNCSGFGEFFEQNIRYYHAILESIESD 395
                   444466544444555555555555554....333322558********96533344478887555336667889*********************** PP

          GRAS 275 lpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr..pL 367
                   +p+++  e+r  vE  ++++ + +++   +++    +e  e+    l+++     ++s+   ++a +l++  ks    + e+++++vl Wkd   pL
  EcC054799.90 396 FPSQQlvEARLAVESLFVSPFV-SCLDWFQTW----EEMRERLDVPLGSCYVDGWRISQASLMEAMRLISGKKSYSVAIGENENEMVLEWKDShmPL 487
                   *****99999999999655544.444444444....3455667899*************************997778888***********864489 PP

          GRAS 368 vsvSaW 373
                   v +SaW
  EcC054799.90 488 VKFSAW 493
                   ****** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.4498472IPR005202Transcription factor GRAS
PfamPF035141.0E-29127493IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000724Biological Processdouble-strand break repair via homologous recombination
GO:0006468Biological Processprotein phosphorylation
GO:0015074Biological ProcessDNA integration
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0030976Molecular Functionthiamine pyrophosphate binding
GO:0051087Molecular Functionchaperone binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MNDPVGHVMG PCPNPEFCVG EHEFCSPFTE TEGSSLYLSP SYLPSEYSPN LVEIHNSRNS  60
ELDPIETFLM EIDGFELISS CNDKGRTPSP TPSLYSEISN DVSSVQASLV LPFEGMEVDN  120
KLSLPHLLKA YGEAMENEQS DLLDVISGCI DESANPLGNV MDRLAFYMFD RKQGLNYIKQ  180
EAFKNFKPAS YAIYQILPHG RFAHFAANSV ILESLPKDIK AVHVIDFDMG EAFQWWALIE  240
SMAMVRRHVA LRITSMKWDD EKGLIEFEEA KRRLQEQAKA VGVELVVEES RIDALASEMK  300
RLSQRGGNNN DMRSQWMVFN VTKGLPHTGR RRSETLVGEF LRLAKEVIAH PAIGGIITSG  360
RGETSCESRN CSGFGEFFEQ NIRYYHAILE SIESDFPSQQ LVEARLAVES LFVSPFVSCL  420
DWFQTWEEMR ERLDVPLGSC YVDGWRISQA SLMEAMRLIS GKKSYSVAIG ENENEMVLEW  480
KDSHMPLVKF SAWGIPSMFK AIV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039165.10.0PREDICTED: nodulation-signaling pathway 2 protein
TrEMBLA0A059A7220.0A0A059A722_EUCGR; Uncharacterized protein
STRINGXP_010039165.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.13e-16RGA-like 1