PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054699.200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MYB | ||||||||
Protein Properties | Length: 305aa MW: 33824.8 Da PI: 5.0111 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.6 | 1.8e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d++k G g W+ +++ g++R++k+c++rw++yl EcC054699.200 14 RGAWTAMEDKILTDYIKANGEGKWRNLPKKAGLRRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ EcC054699.200 67 RGNITLDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899******************.*********.***********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.645 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.93E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.4E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.53E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.434 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.8E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.29E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000045 | Biological Process | autophagosome assembly | ||||
GO:0000290 | Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA | ||||
GO:0006090 | Biological Process | pyruvate metabolic process | ||||
GO:0006352 | Biological Process | DNA-templated transcription, initiation | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006468 | Biological Process | protein phosphorylation | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0016567 | Biological Process | protein ubiquitination | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0045087 | Biological Process | innate immune response | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0000932 | Cellular Component | cytoplasmic mRNA processing body | ||||
GO:0005669 | Cellular Component | transcription factor TFIID complex | ||||
GO:0009654 | Cellular Component | photosystem II oxygen evolving complex | ||||
GO:0045254 | Cellular Component | pyruvate dehydrogenase complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity | ||||
GO:0004672 | Molecular Function | protein kinase activity | ||||
GO:0004742 | Molecular Function | dihydrolipoyllysine-residue acetyltransferase activity | ||||
GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | ||||
GO:0005524 | Molecular Function | ATP binding | ||||
GO:0005525 | Molecular Function | GTP binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0016810 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MGRSPCCAKE GVNRGAWTAM EDKILTDYIK ANGEGKWRNL PKKAGLRRCG KSCRLRWLNY 60 LRPDIKRGNI TLDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TIGRKLQSSS 120 SNSGFVSSRP SLSSFQGSPK SALEKLTIDD TLMPVEPRVS HAKAPACPKA LLSPASCQDR 180 EAQAPDMVDD KDQSSDRHED QVTTVRASDG NSNVSCNFMA DFELDANFLE AFLESELATD 240 TQQSCFVNSG LDDSHKRELP SLKSSRDSQE TLAFIDPGET ILSESDLQCM ASLLEDEIDG 300 FNTTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010062698.1 | 0.0 | PREDICTED: myb-related protein Zm38 | ||||
TrEMBL | A0A059BU76 | 0.0 | A0A059BU76_EUCGR; Uncharacterized protein | ||||
STRING | XP_010062698.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 3e-63 | myb domain protein 3 |