PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054690.100
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 502aa    MW: 56204.1 Da    PI: 4.9875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054690.100genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-05151174226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    k  +C+ff++   C++G +C+ +Hg
  EcC054690.100 151 KVQICKFFLQ-QRCRFGTSCRLSHG 174
                    7789******.*********98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5149175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774149176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4151175IPR000571Zinc finger, CCCH-type
SMARTSM004431.0E-13301347IPR000467G-patch domain
PfamPF015851.2E-13303344IPR000467G-patch domain
PROSITE profilePS5017413.468303349IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006397Biological ProcessmRNA processing
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0006979Biological Processresponse to oxidative stress
GO:0009247Biological Processglycolipid biosynthetic process
GO:0015074Biological ProcessDNA integration
GO:0016310Biological Processphosphorylation
GO:0016579Biological Processprotein deubiquitination
GO:0055114Biological Processoxidation-reduction process
GO:0000155Molecular Functionphosphorelay sensor kinase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0004601Molecular Functionperoxidase activity
GO:0005507Molecular Functioncopper ion binding
GO:0008270Molecular Functionzinc ion binding
GO:0010277Molecular Functionchlorophyllide a oxygenase [overall] activity
GO:0016758Molecular Functiontransferase activity, transferring hexosyl groups
GO:0016788Molecular Functionhydrolase activity, acting on ester bonds
GO:0020037Molecular Functionheme binding
GO:0031072Molecular Functionheat shock protein binding
GO:0036459Molecular Functionthiol-dependent ubiquitinyl hydrolase activity
GO:0051082Molecular Functionunfolded protein binding
GO:0051537Molecular Function2 iron, 2 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MASDEEEERV LEVQLELQLQ EQRDSLSSLK EALASDPANP EILAVHEELV SAIRDVEEGL  60
FHLKRARLLR EVDSVVQKSD SAVEDVKVES SDPNDVEAEP LEEQRYSIGS KCRFRHSDGH  120
WYNGQIVGLE GSQLAKISFL TPTTENMLTT KVQICKFFLQ QRCRFGTSCR LSHGVDVPLS  180
SLKKFVPTSW EQSLVGSSIW AMSDSKAGVW REAELESWDD ECGLGQVVFR DDGSSAKLGI  240
DCIALSEYAE IGDEEESDSS SEQSDSSDYE EEDPQGLGFL EITANQRGVQ TETAIFAKWE  300
NHTRGIASKM MANMGYREGM GLGRSGQGMV EPIPVKVLPP KQSLDDALKS NEQDKDHESQ  360
AKKRSRGGKR KREKKFAAAA RAAKDAEERR PDVFSLINTQ LAMHGEALNG KSAKKQQLKD  420
SGEKKIDRQA LVAYDDEMKE LRMRVEKLEE MVVRNKNDKI VCEAAMRKLA ETRKTLAEAE  480
AAHASASHSI MSKEKEKKWL KF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360366AKKRSRG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010049852.10.0PREDICTED: zinc finger CCCH domain-containing protein 18
SwissprotQ6K6870.0C3H18_ORYSJ; Zinc finger CCCH domain-containing protein 18
TrEMBLA0A059CWQ20.0A0A059CWQ2_EUCGR; Uncharacterized protein
STRINGXP_010049852.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.11e-161C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]