PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054610.70 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 195aa MW: 22572.6 Da PI: 8.7839 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 136.9 | 1.3e-42 | 4 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrF Pt+eelv++yL++k+eg++ +++vi+ vdiy+++P+dLp+ + ++ ++w+fF++r++++ +g r++r t++gyWkatg+ EcC054610.70 4 LPPGFRFFPTEEELVSFYLRNKLEGTRqalhGLIHRVIPVVDIYEFHPSDLPQfagdLCCGDPEQWFFFIPRQESEYHGGRPRRLTTTGYWKATGSP 100 79************************95543222347999************645652234677********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s +++ vg+k+t+vfy+grap+g+kt+W m+eyr+ EcC054610.70 101 GLVYS-SNRIVGVKRTMVFYTGRAPSGVKTEWKMNEYRA 138 *****.8999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-50 | 3 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.152 | 4 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-23 | 5 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006412 | Biological Process | translation | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005840 | Cellular Component | ribosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003735 | Molecular Function | structural constituent of ribosome | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0035091 | Molecular Function | phosphatidylinositol binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MEDLPPGFRF FPTEEELVSF YLRNKLEGTR QALHGLIHRV IPVVDIYEFH PSDLPQFAGD 60 LCCGDPEQWF FFIPRQESEY HGGRPRRLTT TGYWKATGSP GLVYSSNRIV GVKRTMVFYT 120 GRAPSGVKTE WKMNEYRATE GEASSPQEIP VVPRHEFSVC RVYKKTKTLR SFDRRPMGEI 180 IRSSQTFQQN TMPND |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-34 | 3 | 165 | 14 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059552.1 | 1e-142 | PREDICTED: NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-69 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A059DJG0 | 1e-141 | A0A059DJG0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059552.1 | 1e-141 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 7e-72 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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