PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054598.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 693aa    MW: 75427.3 Da    PI: 8.8235
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054598.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox277.6e-093924291954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe   ++yp+ +++  LAk+ gLt +qV++WF N R +
  EcC054598.20 392 FEHflHPYPKDSDKHMLAKQAGLTRSQVSNWFINARVR 429
                   554459******************************88 PP
2BELL1201.1e-38256326272
          BELL   2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                   rqelq+kkakL+++l+eV++rYkqy+ q+q v+ssFe++ag+g ak+Yt+lAl++iSr+F+cLkdai++qi
  EcC054598.20 256 RQELQMKKAKLVDMLDEVEQRYKQYHSQMQLVVSSFEQAAGIGVAKSYTALALQTISRQFKCLKDAISSQI 326
                   89********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-60185324IPR006563POX domain
PfamPF075261.4E-47190323IPR006563POX domain
PROSITE profilePS5007112.098370433IPR001356Homeobox domain
CDDcd000861.79E-11373434No hitNo description
SMARTSM003896.6E-8373437IPR001356Homeobox domain
SuperFamilySSF466893.94E-16374440IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.8E-28376439IPR009057Homeodomain-like
PfamPF059202.0E-17390429IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0016567Biological Processprotein ubiquitination
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MATYFHGSSE IESTDGLQTL YILNPNFIPY SNAAHDATAP NTLFLNPMGS ATQPAPSPQL  60
NHNHFVGIPL SGPAAPFGPA ASDVHPNRHE IPSLHNVAPR FRLSHPWGQP DTSAASTDQL  120
QICSATNSAG VSPSQRGLSL SLSTEQSPLS RESDIRGHSH HQVPGINEAR MLARNSSSTV  180
SNVVLGLHGV LLGSKYLKAA QELLDEVVNV GKEIKNHSSA EGANKEKTKL GNKDSSKEEK  240
KVESSSSGSE LGMAHRQELQ MKKAKLVDML DEVEQRYKQY HSQMQLVVSS FEQAAGIGVA  300
KSYTALALQT ISRQFKCLKD AISSQIKATG RSLGEDDCMG VKMEGSRLRY VDHHFQQQRA  360
LHQLGIIHQN NTWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKHMLAK QAGLTRSQVS  420
NWFINARVRL WKPMVEEMYL EETKSREQAG SENGTTRRAA TKSNKDAAGL KSASQEDNAF  480
GMNSSIKSFQ SSPNKALNQA AISPSENSNS TSSTSPMPCA IPPHHGFTLT GRSSNVEVGI  540
TSSPKKPRMS PDFMNPHGII LSRDMDMKGS EPSRELGGGG SNEYIHGGFS AFSMGNIDGR  600
YGNCVALTLG LPHRDQSPSL SVSAAPQNYF PNQSMNHHQL GRTKLVVGNG GEADFFGIAG  660
APQQSQSGSI NYEAIDINNR KRFADHLLPD YVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A5e-16379436158Homeobox protein Meis1
4xrs_B5e-16379436158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010031566.10.0PREDICTED: BEL1-like homeodomain protein 1
TrEMBLA0A059AB490.0A0A059AB49_EUCGR; Uncharacterized protein
STRINGXP_010031566.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50082650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-114BEL1-like homeodomain 1