PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054417.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 235aa    MW: 25865.8 Da    PI: 7.8162
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054417.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26060.64.3e-191160149
        DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkal 49
                  +C aCk+lrrkCa+dCv+apyf  eq p++fa++hk+FGasnv kll + 
  EcC054417.40 11 PCGACKFLRRKCAADCVFAPYFRTEQgPARFAAIHKVFGASNVAKLLLHX 60
                  7*********************999989*****************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089114.18810115IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-171159IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006471Biological Processprotein ADP-ribosylation
GO:0015074Biological ProcessDNA integration
GO:0005634Cellular Componentnucleus
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0008270Molecular Functionzinc ion binding
GO:0051287Molecular FunctionNAD binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
PEMGSSGAGS PCGACKFLRR KCAADCVFAP YFRTEQGPAR FAAIHKVFGA SNVAKLLLHX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXVVYLQAQ LMQVKAQLAQ NLMTNSINNS  120
VAMPNPHQQL GGDSSNNNMS GVQAFAANHM MMMSNNSASP TSSLESIDHS NNSNNSNGAM  180
MMVHHEMESN RDDCYNYQEL SFMLPPSSCT TKKRPPNCDL SELQALAHTM MRNGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-18557556LOB family transfactor Ramosa2.1
5ly0_B1e-18557556LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720528.11e-119PREDICTED: LOB domain-containing protein 16
TrEMBLA0A059A7K61e-120A0A059A7K6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010039235.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.13e-24lateral organ boundaries-domain 16