PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC054363.70

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 280aa MW: 32047.1 Da PI: 8.5725

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC054363.70	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.1	8.6e-54	10	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp k++ e+ewyfF++rd+ky++g r+nrat sgyWkatg+dk+++s + EcC054363.70 10 LPPGFRFHPTDEELIMHYLRNQATSRPCPV-DIIPEVDIYKFDPWQLPDKAEFWENEWYFFTPRDRKYPNGVRPNRATVSGYWKATGTDKAIYS-AS 104 79**************************.99***********8888899***********************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy+gr pkg ktdW+mheyr+ EcC054363.70 105 KYVGVKKALVFYEGRPPKGIKTDWIMHEYRM 135 99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-64	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.539	10	162	IPR003441	NAC domain
Pfam	PF02365	7.5E-27	11	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055078	Biological Process	sodium ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005509	Molecular Function	calcium ion binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
GLSVSSGSGL PPGFRFHPTD EELIMHYLRN QATSRPCPVD IIPEVDIYKF DPWQLPDKAE 60 FWENEWYFFT PRDRKYPNGV RPNRATVSGY WKATGTDKAI YSASKYVGVK KALVFYEGRP 120 PKGIKTDWIM HEYRMTEVKG QAKKRSGSMR LDDWVLCRIY KKRATGKTLE PRIEESNHNV 180 QATDKAYANL DATDPTVLKF PRTFSLTHLL EMDYLAPFSH ILSDNPYSAI FDYQNTISSN 240 NSANDTADQK PHGGHFPHHV AVQNSALNQN MVINPIFDLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-70	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-70	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-70	10	167	17	170	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-70	10	167	17	170	NO APICAL MERISTEM PROTEIN
3swm_A	4e-70	10	167	20	173	NAC domain-containing protein 19
3swm_B	4e-70	10	167	20	173	NAC domain-containing protein 19
3swm_C	4e-70	10	167	20	173	NAC domain-containing protein 19
3swm_D	4e-70	10	167	20	173	NAC domain-containing protein 19
3swp_A	4e-70	10	167	20	173	NAC domain-containing protein 19
3swp_B	4e-70	10	167	20	173	NAC domain-containing protein 19
3swp_C	4e-70	10	167	20	173	NAC domain-containing protein 19
3swp_D	4e-70	10	167	20	173	NAC domain-containing protein 19
4dul_A	4e-70	10	167	17	170	NAC domain-containing protein 19
4dul_B	4e-70	10	167	17	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010066895.1	0.0	PREDICTED: NAC transcription factor 29
Swissprot	K4BWV2	1e-118	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	A0A059BFS8	0.0	A0A059BFS8_EUCGR; Uncharacterized protein
STRING	XP_010066895.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-106	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]