PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EcC054271.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ARF | ||||||||
Protein Properties | Length: 953aa MW: 104453 Da PI: 5.7054 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74 | 1.8e-23 | 150 | 266 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k+lt sd++++g +++p++ ae+ +++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++ EcC054271.50 150 FCKTLTASDTSTHGGFSVPRRAAEKLfpplvmlpksltlkllgtvdfAMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGAKRLRA 245 99*********************999******999999999999999445444.49***************************************** PP T-EEEEEE-SSSEE..EEEEE-S CS B3 77 gDfvvFkldgrsefelvvkvfrk 99 gD+v+F ++++ +l+v+v+r+ EcC054271.50 246 GDSVLFI--RDEKSQLMVGVRRA 266 *******..4577778*****97 PP | |||||||
2 | Auxin_resp | 112.8 | 3.2e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s F+++YnPra++seFv+++ k++ka++ +++svGmRf m+fete+s +rr++Gt++g+sdldp+rWp+SkWr+L+ EcC054271.50 291 AAHAATSRSSFTIFYNPRACPSEFVIPLVKYRKAVYgTRISVGMRFGMMFETEESGKRRYMGTIIGISDLDPLRWPGSKWRNLQ 374 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.96E-42 | 137 | 294 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-39 | 143 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-21 | 149 | 265 | No hit | No description |
Pfam | PF02362 | 1.2E-21 | 150 | 266 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.9E-24 | 150 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.998 | 165 | 267 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-32 | 291 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 24.628 | 844 | 928 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 5.56E-9 | 846 | 923 | No hit | No description |
Pfam | PF02309 | 1.0E-6 | 889 | 929 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0015074 | Biological Process | DNA integration | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005506 | Molecular Function | iron ion binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0016705 | Molecular Function | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | ||||
GO:0020037 | Molecular Function | heme binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 953 aa Download sequence Send to blast |
MGSSAEGSIK TGGPVTVTLP QPTLLEEMKL LKEIQDQSGA RKTINSELWH ACAGPLVTLP 60 QVGSLVYYFP QGHSEQVAVS TKRTATSQIP NYPNLPSQLM CQVHNVTLHA DRETDEIYAQ 120 MCLQPVNSEK DVFPVPDFGL RPSKHPSEFF CKTLTASDTS THGGFSVPRR AAEKLFPPLV 180 MLPKSLTLKL LGTVDFAMQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL TTGWSLFVGA 240 KRLRAGDSVL FIRDEKSQLM VGVRRANRQQ TTLPSSVLST DSMHIGILAA AAHAATSRSS 300 FTIFYNPRAC PSEFVIPLVK YRKAVYGTRI SVGMRFGMMF ETEESGKRRY MGTIIGISDL 360 DPLRWPGSKW RNLQVEWDEP GCGDKQNRVS PWDIETPESL FIFPSLTSAL KRPLHTGFMG 420 GETEWGSLVK RPLIQVPEGG GMNLLPFASV PNLCSEQLIK MIMKPQPQIV NHPSLPQDNN 480 PKVIPGHEVN TMQGTVNQKP QAFNTESAIP PKLIYPHLCP DQSSAMGLSS EVHVTNKVLP 540 PYKTENQAPV ETKDEKLNVD SHLKKDVLNQ VPSTSTGELP EENIASGPSS QQNHLNHPII 600 LNQNQGQIQS QACLWPPQPL QIPIADSNVL HGSSPFVNPD ELMFSSTNKS VAALIRSPGP 660 FSVCGSQDPS ATFGDPVGQL PLISQELWDH QGINLRFPSQ GDQLTPLPEQ DPSSLCGISN 720 SVCLKDLSTE SNNQSGIYSC LNLDASNGGS SAIDPSISSA ILDDFCTIKD GPFPNLSDCL 780 VGNFSSSQDV QSQITSASLA DSQAFSRQDF PDNSGGTSSS NVDFDESSIL KNSTWQQQVA 840 PPMRTYTKVQ KAGSVGRSID VTNFKNYEEL LSAIEYMFGL EGLLNDPRGS GWKLVYVDYE 900 NDVLLVGDDP WEEFVGCVRC IRILSPVEVQ QMSEEGMKLL NASAGQVVNA TTS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 0.0 | 21 | 399 | 30 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061492.1 | 0.0 | PREDICTED: auxin response factor 5 isoform X2 | ||||
Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
TrEMBL | A0A059BR81 | 0.0 | A0A059BR81_EUCGR; Auxin response factor | ||||
STRING | XP_010061491.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19850.1 | 0.0 | ARF family protein |