PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054074.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 332aa    MW: 37750.9 Da    PI: 10.5913
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054074.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1840130199
                   EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   ffkv     +++s++l +p +f+++++g+   +k+ +l++++grsW + +   + +++ ++++GW++Fv ++ L+  Df++F+++++s f  +vkvf
  EcC054074.30  40 FFKVY--LPSFSSHQLLIPPDFVKNFKGV--VPKKAVLKNTTGRSWPIGI--AGVGNTLFIKSGWRDFVIDHPLDFADFLIFRYIRDSVF--LVKVF 128
                   77888..788999**********999888..4568***************..**********************************9999..***99 PP

                   -S CS
            B3  98 rk 99 
                    k
  EcC054074.30 129 GK 130
                   87 PP
2B350.83.1e-162273021186
                   HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
            B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                    ++++l +p +f++++  +++++e  ++++++++g +W v++  ++  gr++l++GW eF k n+L++gD +v++++ g
  EcC054074.30 227 YALKLLFIPTSFLKRNhiKLNPNE--KMIVRNQNGGTWPVQI-NERIAGRFYLSSGWTEFRKGNNLRVGDQLVLEFVlG 302
                   456779**********88777666..7***************.5777889************************96532 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-2132133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-2433133IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.80338131IPR003340B3 DNA binding domain
CDDcd100177.45E-1540128No hitNo description
SMARTSM010192.0E-1840131IPR003340B3 DNA binding domain
PfamPF023621.4E-1540130IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-17215304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-16215304IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.731217318IPR003340B3 DNA binding domain
CDDcd100171.03E-13218300No hitNo description
SMARTSM010191.2E-9220318IPR003340B3 DNA binding domain
PfamPF023621.7E-13226302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
KTKICCFPTA TAIETTSGSR RAMDRRRAAK TSSSDEPLEF FKVYLPSFSS HQLLIPPDFV  60
KNFKGVVPKK AVLKNTTGRS WPIGIAGVGN TLFIKSGWRD FVIDHPLDFA DFLIFRYIRD  120
SVFLVKVFGK NGCRKEITNG VNRPLAVVKT EELADEVKEA EQNQMRPVQA CKRKFVDLNI  180
DKVENHVHRD SRFKTKLELI GETVSKCSVK TYAMPKNPHF VSRISKYALK LLFIPTSFLK  240
RNHIKLNPNE KMIVRNQNGG TWPVQINERI AGRFYLSSGW TEFRKGNNLR VGDQLVLEFV  300
LGEGNACSET TVRVLPPGLK IQKDPRYFVV KA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070479.10.0PREDICTED: putative B3 domain-containing protein At5g66980
RefseqXP_018716426.10.0PREDICTED: putative B3 domain-containing protein At5g66980
STRINGXP_010070479.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.12e-38B3 family protein