PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC054064.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 624aa    MW: 71280.5 Da    PI: 9.8233
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC054064.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.3e-07532581147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
     EcC054064.30 532 RRPFSVTEVEALVQAVEKLGTGRWRDVKLRAFdsaKHRTYVDLKDKWKTL 581
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.53E-5334410IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.654527586IPR017930Myb domain
SMARTSM007173.3E-7531584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-10532582IPR009057Homeodomain-like
CDDcd116601.58E-15533583No hitNo description
SuperFamilySSF466891.88E-15533614IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0031047Biological Processgene silencing by RNA
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MVLNRRLEYG FNGYQVPTMP RGTRSARRRN SIKKNGEDNK MHAFDLLATL AGKLLVGNSS  60
SSSSSNSSTK KDQFPVTDST GIEEGCHNQC KQLEVQLCDQ GSCGRSMLDS QLESQQHEDP  120
KLSLEDIQHP VIGSTDCSER LGTDEDKRND ETSGHAVLGT LMSTDSKLED DTQNEIKVEQ  180
LYSEKAPNDN XXXXXXXXXX XXXXXXXNVE VVGRDDDEKS SGCTHPIPIK KSFRHIGDRR  240
IRKVWASRHW KVHPRTGVNF KADYKDKSSY YKRQRSQRNY PFKKRKFFDI DFESYSDKEI  300
SSNATVYPPE NHTDGAVSAK RKSPPASGQH LSYQSTDSHV KLRIESFTVP ELLIEIPETA  360
TIGSLKRAVM EAVSGVLGSE LRVGVLLQGK KVGDDSKTLL QTGISHDKQL SSLGXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXLHRK SKRSEFAQRR IRRPFSVTEV  540
EALVQAVEKL GTGRWRDVKL RAFDSAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE  600
LLDRVLTAHA YWSQHQAKQQ LKHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-555176222107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276285QRNYPFKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043540.10.0PREDICTED: telomere repeat-binding protein 5
TrEMBLA0A059D5700.0A0A059D570_EUCGR; Uncharacterized protein
STRINGXP_010043540.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-58TRF-like 2