PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053687.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 388aa    MW: 41390.5 Da    PI: 9.3827
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053687.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.1e-154390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed  l+++vk +G g+W++I r+ g+ R++k+c++rw ++l
     EcC053687.30 43 KGPWSAGEDAVLIEYVKAHGEGNWNAIRRKTGLMRCGKSCRLRWANHL 90
                     79******************************************9986 PP
2Myb_DNA-binding49.59.9e-1696139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE+ ++++++++lG++ W++ a+ ++ gRt++++k++w++
     EcC053687.30  96 KGAFSPEEEAKIIQLHARLGNR-WARMAAQLP-GRTDNEIKNFWNT 139
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.2743890IPR017930Myb domain
SuperFamilySSF466892.8E-2841137IPR009057Homeodomain-like
SMARTSM007174.6E-124292IPR001005SANT/Myb domain
PfamPF002495.3E-134390IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-234497IPR009057Homeodomain-like
CDDcd001671.92E-104590No hitNo description
PROSITE profilePS5129424.83491145IPR017930Myb domain
SMARTSM007172.0E-1595143IPR001005SANT/Myb domain
PfamPF002497.6E-1596139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2598144IPR009057Homeodomain-like
CDDcd001672.24E-1198139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006486Biological Processprotein glycosylation
GO:0006508Biological Processproteolysis
GO:0009094Biological ProcessL-phenylalanine biosynthetic process
GO:0015074Biological ProcessDNA integration
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0004664Molecular Functionprephenate dehydratase activity
GO:0005515Molecular Functionprotein binding
GO:0008378Molecular Functiongalactosyltransferase activity
GO:0016597Molecular Functionamino acid binding
GO:0016810Molecular Functionhydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MLINTNFDGA EKTGLEAQGE GDDRTSGGGS GGNGGQGQGA LKKGPWSAGE DAVLIEYVKA  60
HGEGNWNAIR RKTGLMRCGK SCRLRWANHL RPNLKKGAFS PEEEAKIIQL HARLGNRWAR  120
MAAQLPGRTD NEIKNFWNTR MKRRQRANEP LYPQQVQPEA TVAYDMNLQP QPVPTSSLHS  180
LLAPPPQQQP TLSANVYHSV DPLSYPKPYH HPENIMNGIL PAPSVLPPHS LSSLPPFLFD  240
LGASDLNLVL DTFNSGVASV ERKPIITDRQ RETSMAAAAT PGMTASNNSS VMGGNYMMGA  300
SAGGAASSCC SNNFEATPTS AVPSLTVPKN SVLLGGLFEE ARAASSQKVK GSMVGGANVG  360
RAERGSHQGM QGNQRWENIC SAPASSLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-294114425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010068043.10.0PREDICTED: transcriptional activator Myb
TrEMBLA0A059DDD00.0A0A059DDD0_EUCGR; Uncharacterized protein
STRINGXP_010068043.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.24e-66myb domain protein 101