PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052716.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GRAS

Protein Properties

Length: 567aa MW: 63419.8 Da PI: 6.1724

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052716.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	273.2	8e-84	197	565	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fsevsPilkf 93 +lLl++Ae v +++l +a++lL+ + las++++p qR++ +f+eAL+ r+ r e+ ++++++ ++ k s+++ +++l + P+ ++ EcC052716.10 197 AQLLLAAAEKVGDQQLDCASRLLSYCELLASKRASPAQRMVLHFVEALRDRIDR---ETGRSISMKGAEGKAgSISRCLSTNLttlkMHAHLPFSQV 290 699*************************************************...55555555555544445555555555566889999* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189 +++ta q I e + +++r+H iD++i G+QW+ L+qaLa+R+++p l+iT+vgs ++++++ee g+rL ++Ae+l++pf+f+v+ +le++ EcC052716.10 291 TQFTALQVIIEHTVSATRIHLIDLQIRSGIQWIVLIQALAERKGNPVeLLKITAVGS---VDRDKIEEAGKRLGSIAESLKIPFSFQVVFLPNLEEI 384 ***************************************6665499***...79**********************9999* PP GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 + e + ++ gEa+aV l l ++ ++++sle+ ++++v++l+P v+v++e ea+hns+sF++rf+eal +ysa fd+le+ + +e+e ++ vE EcC052716.10 385 REELFILEDGEAIAVYAPLVLRTMIARPTSLEK----LISVVRNLNPSVMVMTEVEANHNSPSFVARFIEALFFYSAYFDCLETCMTPETEYQTIVE 477 999999999********************....*********************************************99999999999 PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++ i+n+v++eg er+ r + Wr+ + + + ++++s+ a+l+ +++ ++ +++ + ++l+ gWk+ p++s+SaW+ EcC052716.10 478 EL-FSSGIRNIVSMEGHERVVRSVKIDVWRAFFVRYRMVEIEFSDASLYHAHLVAKQFTcERFCTLDRDGNCLLVGWKGTPMFSLSAWK 565 98.****************************************************88878999*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.176	170	544	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-81	197	565	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence Send to blast
MANVSLSLPS FGFDGGYVLD GLDKEERATK GAQEHRGEDV AELHPFFSGF GSQQGNLRSK 60 GVVHLPDRSQ QLGASCMVPD QLNLNVSSPP ALGSEESPEF GNMQKPMVPP SSKASLELLS 120 NYWTVLKKSK RDEPREPHRE APVGLPKLST EEIMRVAGTR YIQFQDQRDN CFSLLTHPCG 180 PAFSGLSEED LKEVELAQLL LAAAEKVGDQ QLDCASRLLS YCELLASKRA SPAQRMVLHF 240 VEALRDRIDR ETGRSISMKG AEGKAGSISR CLSTNLTTLK MHAHLPFSQV TQFTALQVII 300 EHTVSATRIH LIDLQIRSGI QWIVLIQALA ERKGNPVELL KITAVGSVDR DKIEEAGKRL 360 GSIAESLKIP FSFQVVFLPN LEEIREELFI LEDGEAIAVY APLVLRTMIA RPTSLEKLIS 420 VVRNLNPSVM VMTEVEANHN SPSFVARFIE ALFFYSAYFD CLETCMTPET EYQTIVEELF 480 SSGIRNIVSM EGHERVVRSV KIDVWRAFFV RYRMVEIEFS DASLYHAHLV AKQFTCERFC 540 TLDRDGNCLL VGWKGTPMFS LSAWKFR

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence Send to blast

MANVSLSLPS FGFDGGYVLD GLDKEERATK GAQEHRGEDV AELHPFFSGF GSQQGNLRSK  60
GVVHLPDRSQ QLGASCMVPD QLNLNVSSPP ALGSEESPEF GNMQKPMVPP SSKASLELLS  120
NYWTVLKKSK RDEPREPHRE APVGLPKLST EEIMRVAGTR YIQFQDQRDN CFSLLTHPCG  180
PAFSGLSEED LKEVELAQLL LAAAEKVGDQ QLDCASRLLS YCELLASKRA SPAQRMVLHF  240
VEALRDRIDR ETGRSISMKG AEGKAGSISR CLSTNLTTLK MHAHLPFSQV TQFTALQVII  300
EHTVSATRIH LIDLQIRSGI QWIVLIQALA ERKGNPVELL KITAVGSVDR DKIEEAGKRL  360
GSIAESLKIP FSFQVVFLPN LEEIREELFI LEDGEAIAVY APLVLRTMIA RPTSLEKLIS  420
VVRNLNPSVM VMTEVEANHN SPSFVARFIE ALFFYSAYFD CLETCMTPET EYQTIVEELF  480
SSGIRNIVSM EGHERVVRSV KIDVWRAFFV RYRMVEIEFS DASLYHAHLV AKQFTCERFC  540
TLDRDGNCLL VGWKGTPMFS LSAWKFR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	9e-32	204	567	26	380	Protein SCARECROW
5b3h_D	9e-32	204	567	26	380	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010026092.2	0.0	PREDICTED: protein SCARECROW 1
TrEMBL	A0A059AWT1	0.0	A0A059AWT1_EUCGR; Uncharacterized protein
STRING	XP_010026092.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16533	9	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-49	RGA-like 1