PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052511.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 181aa MW: 20498.6 Da PI: 9.8587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052511.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.8	3.5e-12	9	61	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55 r+ + Er+RR+r++ +++L +l+P+ + p + ls + L kA +YIk+Lq EcC052511.30 9 RADRKTTERNRRNRMKALLSKLHSLVPPhC---PREStLSMPDQLGKAANYIKNLQ 61 6667889*******************88...55555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.04E-7	5	65	No hit	No description
SuperFamily	SSF47459	3.66E-13	7	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.081	7	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	9	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-8	10	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0017	13	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MERKPGSSRA DRKTTERNRR NRMKALLSKL HSLVPPHCPR ESTLSMPDQL GKAANYIKNL 60 QVKVQKMREQ KERLLEIEKI NTTMNNGLTI GFKSPEIGIR KSGSILEVVL VTGLDGQFMF 120 NQTVRVIHEE GADVMNANFS YVGDAMLHTV HAKVGDGDST DERISQRLQE MVNDMLMELH 180 P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057405.1	1e-131	PREDICTED: uncharacterized protein LOC104445266 isoform X1
TrEMBL	A0A059C9F0	1e-130	A0A059C9F0_EUCGR; Uncharacterized protein
STRING	XP_010057405.1	1e-131	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1278	25	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	2e-41	bHLH family protein